Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   P3T65_RS10825 Genome accession   NZ_CP120376
Coordinates   2321438..2323027 (-) Length   529 a.a.
NCBI ID   WP_024763096.1    Uniprot ID   -
Organism   Pseudomonas nitroreducens strain L4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316438..2328027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS10800 (P3T65_10800) pilV 2317047..2317616 (-) 570 WP_024763091.1 type IV pilus modification protein PilV -
  P3T65_RS10805 (P3T65_10805) - 2317625..2318101 (-) 477 WP_024763092.1 GspH/FimT family pseudopilin -
  P3T65_RS10810 (P3T65_10810) - 2318253..2318765 (-) 513 WP_024763093.1 GspH/FimT family pseudopilin -
  P3T65_RS10815 (P3T65_10815) thiO 2318960..2320069 (+) 1110 WP_277369273.1 glycine oxidase ThiO -
  P3T65_RS10820 (P3T65_10820) pilR 2320085..2321422 (-) 1338 WP_024763095.1 sigma-54-dependent transcriptional regulator Regulator
  P3T65_RS10825 (P3T65_10825) pilS 2321438..2323027 (-) 1590 WP_024763096.1 sensor histidine kinase Regulator
  P3T65_RS10830 (P3T65_10830) - 2323017..2323259 (-) 243 WP_277369412.1 PP0621 family protein -
  P3T65_RS10835 (P3T65_10835) - 2323415..2324440 (-) 1026 WP_024763098.1 outer membrane protein assembly factor BamD -
  P3T65_RS10840 (P3T65_10840) rluD 2324588..2325547 (+) 960 WP_024763099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P3T65_RS10845 (P3T65_10845) pgeF 2325544..2326269 (+) 726 WP_037011615.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58654.91 Da        Isoelectric Point: 7.9417

>NTDB_id=805266 P3T65_RS10825 WP_024763096.1 2321438..2323027(-) (pilS) [Pseudomonas nitroreducens strain L4]
MVAEGISLTGQGLRVLRLYHLYRLTIGLVLVLLISSSLDDELLKLAHPELFHVGCWVYLILNILIAVLMPTPRQLLPLFI
LAALDILLLSALFYTAGGIPSGIGNLMVVAVAIANILLRGRIGLLIAAIAAINLIYLTFYLSLSQVTALNHYVQAGGLGA
LSFASALLIQALARRQQVVESIAEQRATTVANLEELNALILQRMRTGILVLGDRHRVLLANQSATTLLGGHDLPGHSLAE
YSPQLVSSLQQWQQNPALRPPSLQPAESGPTVQPSFIPLRRGNEQHILMFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDKPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRYAGEMREGLREGQ
QIHVETGQGTVQTRMDPHQLTQVLTNLVQNGLRYSTQKNGTGQVWLRLYRDSETDLPVLEVLDDGPGISAEQRGKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=805266 P3T65_RS10825 WP_024763096.1 2321438..2323027(-) (pilS) [Pseudomonas nitroreducens strain L4]
GTGGTCGCTGAAGGGATCTCCCTCACGGGCCAGGGCCTGCGGGTCCTGCGCCTGTACCACCTGTATCGCCTGACCATCGG
CCTGGTGCTGGTACTGCTGATCTCCAGCAGCCTGGATGACGAATTGCTCAAGCTGGCCCACCCCGAGCTTTTCCATGTCG
GCTGCTGGGTCTACCTGATCCTCAACATCCTGATCGCCGTGCTGATGCCGACACCGCGCCAGCTGCTGCCGCTGTTCATC
CTGGCAGCGCTGGACATACTCCTGCTCAGCGCGCTGTTCTATACCGCCGGCGGCATCCCCAGTGGCATCGGCAACTTGAT
GGTGGTCGCCGTGGCCATTGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCATCGCCGCCATCAACC
TGATCTACCTGACCTTCTACCTGAGCCTCAGCCAGGTCACCGCCCTCAACCACTACGTGCAGGCCGGCGGCCTGGGCGCC
CTGAGCTTCGCCTCGGCCCTGCTGATCCAGGCCCTGGCTCGGCGCCAGCAGGTCGTCGAGAGCATTGCCGAGCAACGTGC
CACCACGGTCGCCAACCTCGAAGAGCTCAACGCACTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTATTGGGCGATC
GCCACCGCGTGCTGCTGGCCAACCAGAGCGCCACTACGCTGCTGGGTGGCCACGACCTGCCCGGCCACTCGCTGGCCGAG
TACAGCCCGCAGCTCGTCTCCAGCCTGCAGCAATGGCAGCAGAATCCCGCCCTGCGCCCGCCAAGCCTGCAACCTGCGGA
GTCCGGCCCGACCGTACAGCCCAGCTTCATCCCCCTGCGCCGGGGCAACGAACAGCATATCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTTGCGGCGCTTGGCCGGCTGACCGCCGGCATTGCCCATGAGATC
CGCAACCCACTGGGCGCGATCAGCCATGCGGCGCAGTTGCTGCTGGAGTCCGAAGAGCTGGACAAGCCCGACCGACGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTCATCGAGAACGTCCTGCAGCTGTCGCGCCGACGCCAGT
CCGAACCGCAACTGCTCGACCTGAAATACTGGCTGCACCGCTATGCCGGCGAAATGCGCGAGGGCCTGCGCGAGGGACAG
CAGATCCACGTGGAGACCGGCCAGGGCACCGTGCAGACGCGCATGGACCCGCATCAGTTGACGCAGGTACTGACCAACCT
CGTGCAGAATGGGTTACGGTACAGCACCCAGAAGAACGGCACCGGCCAGGTCTGGCTGCGCCTGTACCGCGACAGCGAGA
CCGACTTGCCCGTGCTGGAAGTGCTCGACGACGGCCCCGGCATCAGCGCCGAACAGCGGGGAAAACTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGCCTTGGCCTGTACATCTCCCGCGAGCTGTGCGAAAGCAATCAGGCTCGACTGGA
CTACAAGACGCGTGACGAAGGCGGCAGTTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

71.321

100

0.715