Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3T65_RS09215 Genome accession   NZ_CP120376
Coordinates   1971228..1971725 (+) Length   165 a.a.
NCBI ID   WP_017521888.1    Uniprot ID   A0A5R9RBY4
Organism   Pseudomonas nitroreducens strain L4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1966228..1976725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T65_RS09205 (P3T65_09205) uvrA 1966773..1969607 (-) 2835 WP_277369221.1 excinuclease ABC subunit UvrA -
  P3T65_RS09210 (P3T65_09210) - 1969821..1971209 (+) 1389 WP_024767075.1 MFS transporter -
  P3T65_RS09215 (P3T65_09215) ssb 1971228..1971725 (+) 498 WP_017521888.1 single-stranded DNA-binding protein Machinery gene
  P3T65_RS09220 (P3T65_09220) - 1971902..1972090 (+) 189 WP_024767074.1 hypothetical protein -
  P3T65_RS09225 (P3T65_09225) - 1972222..1974678 (-) 2457 WP_277369222.1 TonB-dependent siderophore receptor -
  P3T65_RS09230 (P3T65_09230) - 1974982..1975950 (-) 969 WP_277369223.1 FecR domain-containing protein -
  P3T65_RS09235 (P3T65_09235) - 1975947..1976444 (-) 498 WP_277369224.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18349.27 Da        Isoelectric Point: 5.2781

>NTDB_id=805264 P3T65_RS09215 WP_017521888.1 1971228..1971725(+) (ssb) [Pseudomonas nitroreducens strain L4]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDKYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAQRPAPQQQSQPAPQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=805264 P3T65_RS09215 WP_017521888.1 1971228..1971725(+) (ssb) [Pseudomonas nitroreducens strain L4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTAGGTAACGTCGGTGGCGATCCGGAAACCCGTTACATGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGACAAGTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGCTGCTCGGCGGCCGTCCGGGCGCCGGTGGTGACGATGCTCCGCGCGCTCCCCGCGAGCCGCAGCAGCGTC
CGCAGCAGGCCCAGCGTCCTGCGCCGCAGCAGCAGTCCCAGCCCGCGCCGCAACCGGCTCCGGACTACGACAGCTTCGAC
GACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9RBY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.606
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.558
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.491
  ssb Neisseria meningitidis MC58

45.198

100

0.485