Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PVE35_RS24135 Genome accession   NZ_CP120359
Coordinates   5245535..5245699 (+) Length   54 a.a.
NCBI ID   WP_277374944.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5240535..5250699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS24105 sutA 5240847..5241170 (-) 324 WP_268179713.1 transcriptional regulator SutA -
  PVE35_RS24110 - 5241248..5241673 (-) 426 WP_268179715.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PVE35_RS24115 - 5241766..5243019 (-) 1254 WP_268179717.1 ammonium transporter -
  PVE35_RS24120 - 5243134..5244450 (-) 1317 WP_268179719.1 ammonium transporter -
  PVE35_RS24125 glnK 5244496..5244834 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  PVE35_RS24130 - 5245243..5245503 (+) 261 WP_277373226.1 accessory factor UbiK family protein -
  PVE35_RS24135 comM 5245535..5245699 (+) 165 WP_277374944.1 hypothetical protein Machinery gene
  PVE35_RS24140 - 5245850..5246023 (+) 174 WP_277373227.1 hypothetical protein -
  PVE35_RS24145 - 5246065..5247561 (+) 1497 WP_277373228.1 anti-phage dCTP deaminase -
  PVE35_RS24150 - 5247699..5248678 (-) 980 Protein_4751 IS5 family transposase -
  PVE35_RS24155 - 5249190..5249321 (-) 132 Protein_4752 IS3 family transposase -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 5779.74 Da        Isoelectric Point: 7.2006

>NTDB_id=805206 PVE35_RS24135 WP_277374944.1 5245535..5245699(+) (comM) [Pseudomonas sp. AA-38]
MSLAIVHSRAQVGVEAPAVTIEAHLANGLPALTLVGLPETALNKRFKKQEDPYL

Nucleotide


Download         Length: 165 bp        

>NTDB_id=805206 PVE35_RS24135 WP_277374944.1 5245535..5245699(+) (comM) [Pseudomonas sp. AA-38]
ATGTCCCTGGCCATCGTCCACAGCCGTGCCCAGGTCGGTGTCGAAGCACCGGCCGTCACCATCGAAGCCCATCTGGCCAA
CGGCCTGCCGGCCCTGACTCTGGTGGGCCTGCCGGAAACGGCGCTTAACAAGCGATTTAAAAAACAAGAAGATCCATATC
TATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.909

81.481

0.537
  comM Glaesserella parasuis strain SC1401

63.636

81.481

0.519
  comM Vibrio campbellii strain DS40M4

61.364

81.481

0.5
  comM Vibrio cholerae strain A1552

61.364

81.481

0.5
  comM Legionella pneumophila str. Paris

50

81.481

0.407
  comM Legionella pneumophila strain ERS1305867

50

81.481

0.407