Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PVE35_RS03250 Genome accession   NZ_CP120359
Coordinates   716607..717107 (+) Length   166 a.a.
NCBI ID   WP_268181186.1    Uniprot ID   -
Organism   Pseudomonas sp. AA-38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 711607..722107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE35_RS03240 uvrA 712132..714990 (-) 2859 WP_277373796.1 excinuclease ABC subunit UvrA -
  PVE35_RS03245 - 715203..716597 (+) 1395 WP_268181185.1 MFS transporter -
  PVE35_RS03250 ssb 716607..717107 (+) 501 WP_268181186.1 single-stranded DNA-binding protein Machinery gene
  PVE35_RS03255 gstA 717166..717771 (-) 606 WP_277373797.1 glutathione transferase GstA -
  PVE35_RS03260 - 717877..718290 (+) 414 WP_268181188.1 helix-turn-helix domain-containing protein -
  PVE35_RS03265 - 718376..719260 (+) 885 WP_268181190.1 sugar nucleotide-binding protein -
  PVE35_RS03270 - 719253..720176 (+) 924 WP_277373798.1 NAD-dependent epimerase/dehydratase family protein -
  PVE35_RS03275 - 720241..720933 (-) 693 WP_268181194.1 OmpW family outer membrane protein -
  PVE35_RS03280 - 721062..721583 (-) 522 WP_268181196.1 DUF3299 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18570.44 Da        Isoelectric Point: 5.3111

>NTDB_id=805184 PVE35_RS03250 WP_268181186.1 716607..717107(+) (ssb) [Pseudomonas sp. AA-38]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGQMQLLGGRPGGDEGGAPRQSRPAPQQREPQQSTPRQERPAPQQSQPAPDYDSF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=805184 PVE35_RS03250 WP_268181186.1 716607..717107(+) (ssb) [Pseudomonas sp. AA-38]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAACGGCAA
CGCCGTGACCAACATCACCCTGGCCACCTCCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGGCGTCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGTTACACCACCGAGATCGTGGTGGACATCAACGG
CCAGATGCAGTTGCTCGGTGGTCGTCCGGGTGGTGATGAAGGCGGTGCCCCGCGTCAATCGCGCCCGGCGCCGCAGCAGC
GTGAGCCGCAGCAGTCGACTCCGCGTCAGGAACGTCCGGCGCCGCAGCAATCGCAGCCGGCTCCGGACTACGATAGCTTC
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.116

100

0.645
  ssb Glaesserella parasuis strain SC1401

52.174

100

0.578
  ssb Neisseria meningitidis MC58

48.588

100

0.518
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.518