Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYR68_RS08945 Genome accession   NZ_CP120230
Coordinates   1768409..1768915 (+) Length   168 a.a.
NCBI ID   WP_097579281.1    Uniprot ID   -
Organism   Rhizobium croatiense strain MC77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1763409..1773915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYR68_RS08930 (PYR68_08930) - 1763916..1764722 (-) 807 WP_097579279.1 DUF72 domain-containing protein -
  PYR68_RS08935 (PYR68_08935) - 1764747..1765206 (-) 460 Protein_1756 GNAT family N-acetyltransferase -
  PYR68_RS08940 (PYR68_08940) uvrA 1765203..1768124 (-) 2922 WP_097579280.1 excinuclease ABC subunit UvrA -
  PYR68_RS08945 (PYR68_08945) ssb 1768409..1768915 (+) 507 WP_097579281.1 single-stranded DNA-binding protein Machinery gene
  PYR68_RS08950 (PYR68_08950) - 1769002..1769649 (-) 648 WP_038688903.1 MarC family protein -
  PYR68_RS08955 (PYR68_08955) gyrA 1769887..1772694 (+) 2808 WP_097579283.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18072.75 Da        Isoelectric Point: 5.3175

>NTDB_id=804764 PYR68_RS08945 WP_097579281.1 1768409..1768915(+) (ssb) [Rhizobium croatiense strain MC77]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFGSTLTMLDGRGEGGGASGGRGSAGGGNDYGDDYGAPAPSSSSNRSGGGGNFSR
DLDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=804764 PYR68_RS08945 WP_097579281.1 1768409..1768915(+) (ssb) [Rhizobium croatiense strain MC77]
ATGGCTGGTAGTGTGAACAAGGTAATTCTGGTTGGAAACGTCGGTGCAGACCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAAACCTGGCGCGACCGAAATTCCGGCGAGCGCCGTGAGAAGACCGAAT
GGCACACTGTCGTCGTCTTCAATGAAGGCCTCTGCAAGGTCGTCGAACAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACAGCACGGAAGTAGTGCTGCAGGGTTT
CGGTTCGACGCTGACGATGCTCGACGGCCGCGGTGAAGGCGGCGGCGCGAGCGGCGGCCGTGGCAGTGCCGGCGGCGGCA
ACGATTATGGCGACGACTACGGCGCCCCGGCTCCCTCCTCATCGTCGAACCGCAGCGGCGGCGGCGGCAACTTCTCGCGC
GATCTCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.851

100

0.506
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.494
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.405
  ssb Neisseria meningitidis MC58

36.313

100

0.387