Detailed information NTG0804294

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RKV26_RS08535
• Genome accession: NZ_CP134532
• Coordinates: 1738203..1739207 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain KNIH_6268
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1733203..1744207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKV26_RS08520	yajC	1735735..1735995 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
RKV26_RS08525	tgt	1736014..1737153 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
RKV26_RS08530	queA	1737176..1738201 (-)	1026	WP_267815059.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
RKV26_RS08535	ruvB	1738203..1739207 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RKV26_RS08540	ruvA	1739239..1739841 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
RKV26_RS08545	-	1739855..1740310 (-)	456	WP_000368902.1	ACT domain-containing protein	-
RKV26_RS08550	obgE	1740323..1741615 (-)	1293	WP_154283766.1	GTPase ObgE	-
RKV26_RS08555	rpmA	1741972..1742256 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
RKV26_RS08560	-	1742268..1742588 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
RKV26_RS08565	rplU	1742594..1742902 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
RKV26_RS08570	mreD	1743195..1743725 (-)	531	WP_209205777.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=804294 RKV26_RS08535 WP_001005767.1 1738203..1739207(-) (ruvB) [Staphylococcus aureus strain KNIH_6268]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=804294 RKV26_RS08535 WP_001005767.1 1738203..1739207(-) (ruvB) [Staphylococcus aureus strain KNIH_6268]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCAAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515