Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RJD14_RS00670 Genome accession   NZ_CP134493
Coordinates   154413..155507 (-) Length   364 a.a.
NCBI ID   WP_184597233.1    Uniprot ID   A0ABZ1NN05
Organism   Streptomyces sp. CGMCC 4.1456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149413..160507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS00650 (RJD14_00650) - 150163..150702 (-) 540 WP_311124701.1 adenine phosphoribosyltransferase -
  RJD14_RS00655 (RJD14_00655) secF 150699..151808 (-) 1110 WP_311124702.1 protein translocase subunit SecF -
  RJD14_RS00660 (RJD14_00660) secD 151810..153579 (-) 1770 WP_311124703.1 protein translocase subunit SecD -
  RJD14_RS00665 (RJD14_00665) yajC 153712..154227 (-) 516 WP_193480222.1 preprotein translocase subunit YajC -
  RJD14_RS00670 (RJD14_00670) ruvB 154413..155507 (-) 1095 WP_184597233.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RJD14_RS00675 (RJD14_00675) ruvA 155531..156136 (-) 606 WP_184597235.1 Holliday junction branch migration protein RuvA -
  RJD14_RS00680 (RJD14_00680) ruvC 156133..156663 (-) 531 WP_193480224.1 crossover junction endodeoxyribonuclease RuvC -
  RJD14_RS00685 (RJD14_00685) - 156802..157554 (-) 753 WP_193480225.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RJD14_RS00690 (RJD14_00690) pdxT 157603..158211 (-) 609 WP_311124704.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RJD14_RS00695 (RJD14_00695) pdxS 158225..159130 (-) 906 WP_184597240.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RJD14_RS00700 (RJD14_00700) - 159327..159908 (-) 582 WP_311124705.1 hypothetical protein -
  RJD14_RS00705 (RJD14_00705) - 160026..160304 (-) 279 WP_311124706.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38962.34 Da        Isoelectric Point: 4.6392

>NTDB_id=804155 RJD14_RS00670 WP_184597233.1 154413..155507(-) (ruvB) [Streptomyces sp. CGMCC 4.1456]
MNWDDTTDTSAAERLVGPAAERLVDSVADGEDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP
GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPG
ATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSAHLLEVETEPEGAAEIAGRSRGTPRIAN
RLLRRVRDYAQVKADGLITKDIAAAALAVYEVDERGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF
LVREGLLARTPRGRVATPAAWAHLGLTPPGSQTTGNGQQDLFGA

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=804155 RJD14_RS00670 WP_184597233.1 154413..155507(-) (ruvB) [Streptomyces sp. CGMCC 4.1456]
ATGAACTGGGACGACACGACCGACACCTCCGCCGCCGAGCGGCTCGTCGGGCCCGCCGCGGAGCGGCTGGTGGACTCCGT
CGCCGACGGTGAGGACCAGGCTGTCGAGGCCGCCCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCC
GCGAGCAGCTCGACCTCGTGCTGCGCGCCGCACGCGCGCGTGGCGCCACCGCCGACCACGTGCTGCTCTCGGGCGCCCCC
GGCCTCGGCAAGACCACCCTGTCGATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACGTCGGGCCCCGCCAT
CCAGCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCA
TGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCGGGA
GCCACCGCCATCCCGCTGGAGCTGCCCCCGTTCACCCTGGTCGGCGCCACCACGCGCGCGGGACTGCTGCCGCCCCCGTT
GCGCGACCGTTTCGGCTTCACCGCCCACATGGAGTTCTACGAACCGGCCGAACTGGAGCGGGTCATCCACCGCTCGGCCC
ACCTCCTCGAGGTCGAGACCGAGCCGGAGGGCGCCGCCGAGATCGCCGGCCGCTCCCGCGGCACCCCCCGCATCGCCAAC
CGTCTGCTGCGCCGCGTCCGGGACTACGCCCAGGTCAAGGCCGACGGACTGATCACCAAGGACATCGCGGCGGCGGCCCT
CGCCGTCTACGAGGTGGACGAGCGAGGCCTCGACCGCCTGGACCGAGGCGTCCTGGAAGCCCTGCTCAAGCTGTTCGGCG
GCGGCCCCGTCGGCCTGTCCACGCTCGCGGTCGCGGTGGGGGAGGAGCGTGAGACCGTGGAGGAGGTGGCCGAACCCTTC
CTGGTACGGGAAGGACTGCTGGCCCGCACCCCGCGCGGCAGGGTCGCCACCCCCGCCGCATGGGCGCATCTCGGCCTCAC
CCCGCCCGGCTCCCAGACCACCGGAAACGGACAACAGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(200-273)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(39-197)

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.015

90.385

0.497
  ruvB Streptococcus pneumoniae TIGR4

52.778

89.011

0.47
  ruvB Streptococcus pneumoniae R6

52.778

89.011

0.47
  ruvB Streptococcus pneumoniae D39

52.778

89.011

0.47
  ruvB Synechocystis sp. PCC 6803

54.14

86.264

0.467
  ruvB Helicobacter pylori 26695

49.55

91.484

0.453