Detailed information NTG0804053

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RJW53_RS00320
• Genome accession: NZ_CP134488
• Coordinates: 52789..53790 (+)
• Length: 333 a.a.
• NCBI ID: WP_024405856.1
• Uniprot ID: -
• Organism: Streptococcus suis strain NLS50
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47789..58790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJW53_RS00290 (RJW53_00290)	-	47839..48417 (+)	579	WP_011921662.1	CPBP family intramembrane glutamic endopeptidase	-
RJW53_RS00295 (RJW53_00295)	-	48432..48860 (+)	429	WP_014636188.1	Msa family membrane protein	-
RJW53_RS00300 (RJW53_00300)	-	48853..49725 (+)	873	WP_074389011.1	ABC transporter ATP-binding protein	-
RJW53_RS00305 (RJW53_00305)	-	49731..50504 (+)	774	WP_012775420.1	membrane protein	-
RJW53_RS00310 (RJW53_00310)	-	50507..52219 (+)	1713	WP_074389012.1	ABC transporter ATP-binding protein	-
RJW53_RS00315 (RJW53_00315)	-	52321..52494 (+)	174	WP_011921669.1	hypothetical protein	-
RJW53_RS00320 (RJW53_00320)	ruvB	52789..53790 (+)	1002	WP_024405856.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RJW53_RS00325 (RJW53_00325)	-	53790..54536 (+)	747	WP_024405857.1	GNAT family N-acetyltransferase	-
RJW53_RS00330 (RJW53_00330)	-	54538..55173 (+)	636	WP_024405858.1	HAD-IA family hydrolase	-
RJW53_RS00335 (RJW53_00335)	-	55476..56678 (-)	1203	WP_074389402.1	IS110 family transposase	-
RJW53_RS00340 (RJW53_00340)	comR	57043..57942 (+)	900	WP_012774888.1	helix-turn-helix domain-containing protein	Regulator

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37558.04 Da
• Isoelectric Point: 4.4673

>NTDB_id=804053 RJW53_RS00320 WP_024405856.1 52789..53790(+) (ruvB) [Streptococcus suis strain NLS50]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLAALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLSTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=804053 RJW53_RS00320 WP_024405856.1 52789..53790(+) (ruvB) [Streptococcus suis strain NLS50]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGATGAGGAGTACGTAGAACGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACGCTTCTTTTTGGCCCTCCGGGTCTGGGGAAAACCACCATGGCCTTTGTCATTGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGCGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCTATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTACCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGTTTTGGGATTACCGGGCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGATATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTTGCTCAGATTATGGGTGACGGCCTGATT
GACGATAGCATTACGGACAAGGCTCTGACCATGCTGGACGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAGCACCCTGTCGGTCAATATCGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAGCCCTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCCTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474