Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RJW49_RS00350 Genome accession   NZ_CP134477
Coordinates   64164..64754 (+) Length   196 a.a.
NCBI ID   WP_014735251.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59164..69754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS00340 (RJW49_00340) - 60547..62070 (+) 1524 WP_014735249.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -
  RJW49_RS00345 (RJW49_00345) hexB 62188..64125 (+) 1938 WP_014735250.1 DNA mismatch repair endonuclease MutL Machinery gene
  RJW49_RS00350 (RJW49_00350) ruvA 64164..64754 (+) 591 WP_014735251.1 Holliday junction branch migration protein RuvA Machinery gene
  RJW49_RS00355 (RJW49_00355) - 65128..65697 (+) 570 WP_014735252.1 DNA-3-methyladenine glycosylase I -
  RJW49_RS00360 (RJW49_00360) cinA 65734..66915 (+) 1182 WP_074393601.1 competence/damage-inducible protein A Machinery gene
  RJW49_RS00365 (RJW49_00365) recA 66967..68118 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  RJW49_RS00370 (RJW49_00370) spx 68354..68752 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  RJW49_RS00375 (RJW49_00375) - 68852..69118 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RJW49_RS00380 (RJW49_00380) ruvX 69118..69537 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21711.05 Da        Isoelectric Point: 5.0727

>NTDB_id=803865 RJW49_RS00350 WP_014735251.1 64164..64754(+) (ruvA) [Streptococcus suis strain NLS40]
MYDYIKGVLTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=803865 RJW49_RS00350 WP_014735251.1 64164..64754(+) (ruvA) [Streptococcus suis strain NLS40]
ATGTACGACTATATTAAAGGAGTTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
ATTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTATGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAGAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.127

100

0.755
  ruvA Streptococcus pneumoniae D39

75.127

100

0.755
  ruvA Streptococcus pneumoniae TIGR4

75.127

100

0.755
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403