Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   RJW55_RS08490 Genome accession   NZ_CP134473
Coordinates   1826083..1826733 (-) Length   216 a.a.
NCBI ID   WP_024376704.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821083..1831733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS08475 (RJW55_08475) - 1822437..1823345 (+) 909 Protein_1650 neutral zinc metallopeptidase -
  RJW55_RS08480 (RJW55_08480) - 1823554..1824105 (-) 552 WP_024418639.1 isoprenylcysteine carboxyl methyltransferase family protein -
  RJW55_RS08485 (RJW55_08485) - 1824711..1826081 (-) 1371 WP_043026219.1 HAMP domain-containing sensor histidine kinase -
  RJW55_RS08490 (RJW55_08490) scnR 1826083..1826733 (-) 651 WP_024376704.1 response regulator transcription factor Regulator
  RJW55_RS08495 (RJW55_08495) - 1826962..1827663 (+) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  RJW55_RS08500 (RJW55_08500) - 1828153..1828407 (-) 255 WP_153595821.1 hypothetical protein -
  RJW55_RS08505 (RJW55_08505) - 1828644..1829216 (-) 573 WP_029174041.1 hypothetical protein -
  RJW55_RS11625 - 1829176..1829301 (-) 126 WP_079270322.1 YSIRK-type signal peptide-containing protein -
  RJW55_RS08510 (RJW55_08510) - 1829575..1830423 (-) 849 WP_043026222.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RJW55_RS08515 (RJW55_08515) amiE 1830553..1831287 (-) 735 WP_043026224.1 amino acid ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24768.88 Da        Isoelectric Point: 4.6866

>NTDB_id=803829 RJW55_RS08490 WP_024376704.1 1826083..1826733(-) (scnR) [Streptococcus suis strain TMW_SS028]
MSRILVVEDDIVISQVVCEFLKEYGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=803829 RJW55_RS08490 WP_024376704.1 1826083..1826733(-) (scnR) [Streptococcus suis strain TMW_SS028]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAATATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGTGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTAACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38