Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RJW55_RS08515 Genome accession   NZ_CP134473
Coordinates   1830553..1831287 (-) Length   244 a.a.
NCBI ID   WP_043026224.1    Uniprot ID   -
Organism   Streptococcus suis strain TMW_SS028     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825553..1836287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW55_RS08490 (RJW55_08490) scnR 1826083..1826733 (-) 651 WP_024376704.1 response regulator transcription factor Regulator
  RJW55_RS08495 (RJW55_08495) - 1826962..1827663 (+) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  RJW55_RS08500 (RJW55_08500) - 1828153..1828407 (-) 255 WP_153595821.1 hypothetical protein -
  RJW55_RS08505 (RJW55_08505) - 1828644..1829216 (-) 573 WP_029174041.1 hypothetical protein -
  RJW55_RS11625 - 1829176..1829301 (-) 126 WP_079270322.1 YSIRK-type signal peptide-containing protein -
  RJW55_RS08510 (RJW55_08510) - 1829575..1830423 (-) 849 WP_043026222.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RJW55_RS08515 (RJW55_08515) amiE 1830553..1831287 (-) 735 WP_043026224.1 amino acid ABC transporter ATP-binding protein Regulator
  RJW55_RS08520 (RJW55_08520) - 1831280..1831969 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  RJW55_RS08525 (RJW55_08525) - 1832095..1832325 (-) 231 WP_002938704.1 DUF1797 family protein -
  RJW55_RS08530 (RJW55_08530) clpE 1832549..1834777 (+) 2229 WP_043026227.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  RJW55_RS08535 (RJW55_08535) - 1834883..1836172 (+) 1290 WP_197315041.1 IS4 family transposase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26825.00 Da        Isoelectric Point: 4.7252

>NTDB_id=803830 RJW55_RS08515 WP_043026224.1 1830553..1831287(-) (amiE) [Streptococcus suis strain TMW_SS028]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIGKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMGIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=803830 RJW55_RS08515 WP_043026224.1 1830553..1831287(-) (amiE) [Streptococcus suis strain TMW_SS028]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCTGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCAAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGGAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAGCGGATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGATCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGGTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365