Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RJ558_RS02670 Genome accession   NZ_CP134397
Coordinates   556584..557594 (-) Length   336 a.a.
NCBI ID   WP_000664529.1    Uniprot ID   Q1CUB7
Organism   Helicobacter pylori strain ICDC15003s     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 551584..562594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ558_RS02625 (RJ558_02625) - 551679..552053 (-) 375 WP_000772151.1 chemotaxis response regulator CheY -
  RJ558_RS02630 (RJ558_02630) - 552342..552944 (+) 603 WP_000291620.1 outer membrane protein -
  RJ558_RS02640 (RJ558_02640) - 553081..553482 (-) 402 WP_310957926.1 hypothetical protein -
  RJ558_RS02645 (RJ558_02645) - 553485..553727 (-) 243 WP_180662828.1 PP0621 family protein -
  RJ558_RS02650 (RJ558_02650) rsmG 553721..554257 (-) 537 WP_180662830.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RJ558_RS02655 (RJ558_02655) queA 554254..555291 (-) 1038 WP_310957927.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RJ558_RS02660 (RJ558_02660) tatC 555295..556041 (-) 747 WP_154412688.1 twin-arginine translocase subunit TatC -
  RJ558_RS02665 (RJ558_02665) tatB 556034..556516 (-) 483 WP_310957929.1 Sec-independent protein translocase protein TatB -
  RJ558_RS02670 (RJ558_02670) ruvB 556584..557594 (-) 1011 WP_000664529.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RJ558_RS02675 (RJ558_02675) panB 557595..558407 (-) 813 WP_000062694.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RJ558_RS02680 (RJ558_02680) - 558556..559278 (+) 723 WP_000523334.1 hypothetical protein -
  RJ558_RS02685 (RJ558_02685) - 559268..560122 (+) 855 WP_310957933.1 outer membrane beta-barrel protein -
  RJ558_RS02690 (RJ558_02690) - 560131..561069 (+) 939 WP_310957934.1 outer membrane beta-barrel protein -
  RJ558_RS02695 (RJ558_02695) - 561079..562410 (+) 1332 WP_310957935.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37310.36 Da        Isoelectric Point: 6.3684

>NTDB_id=803645 RJ558_RS02670 WP_000664529.1 556584..557594(-) (ruvB) [Helicobacter pylori strain ICDC15003s]
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAIKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=803645 RJ558_RS02670 WP_000664529.1 556584..557594(-) (ruvB) [Helicobacter pylori strain ICDC15003s]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGGTTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACTACT
AGGGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCCCTCATCATTAAAAAAGCCGCCATTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTATTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGTACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1CUB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.56

96.131

0.515
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

52.475

90.179

0.473