Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJ643_RS22000 Genome accession   NZ_CP134389
Coordinates   4587759..4588295 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TUM10828     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4582759..4593295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ643_RS21980 (RJ643_21980) soxR 4584488..4584952 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  RJ643_RS21985 (RJ643_21985) soxS 4585038..4585361 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RJ643_RS21990 (RJ643_21990) pdeC 4585367..4586950 (-) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  RJ643_RS21995 (RJ643_21995) yjcB 4587379..4587660 (+) 282 WP_001295689.1 YjcB family protein -
  RJ643_RS22000 (RJ643_22000) ssb 4587759..4588295 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RJ643_RS22005 (RJ643_22005) uvrA 4588550..4591372 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  RJ643_RS22010 (RJ643_22010) yjbR 4591407..4591763 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RJ643_RS22015 (RJ643_22015) yjbQ 4591767..4592183 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RJ643_RS22020 (RJ643_22020) aphA 4592294..4593007 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=803451 RJ643_RS22000 WP_000168305.1 4587759..4588295(-) (ssb) [Escherichia coli strain TUM10828]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=803451 RJ643_RS22000 WP_000168305.1 4587759..4588295(-) (ssb) [Escherichia coli strain TUM10828]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489