Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   P3U35_RS07800 Genome accession   NZ_CP120132
Coordinates   1597494..1598564 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dog044     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592494..1603564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U35_RS07760 (P3U35_07760) gcvPA 1592671..1594017 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  P3U35_RS07765 (P3U35_07765) gcvT 1594037..1595128 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  P3U35_RS07770 (P3U35_07770) - 1595287..1595811 (-) 525 WP_001015120.1 shikimate kinase -
  P3U35_RS07775 (P3U35_07775) - 1595801..1595947 (-) 147 WP_001789879.1 hypothetical protein -
  P3U35_RS07780 (P3U35_07780) comGF 1596044..1596541 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  P3U35_RS07785 (P3U35_07785) comGE 1596459..1596758 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  P3U35_RS07790 (P3U35_07790) comGD 1596745..1597191 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  P3U35_RS07795 (P3U35_07795) comGC 1597169..1597480 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  P3U35_RS07800 (P3U35_07800) comGB 1597494..1598564 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  P3U35_RS07805 (P3U35_07805) comGA 1598536..1599510 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  P3U35_RS07810 (P3U35_07810) - 1599562..1600185 (-) 624 WP_320409472.1 MBL fold metallo-hydrolase -
  P3U35_RS07815 (P3U35_07815) - 1600182..1600511 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  P3U35_RS07820 (P3U35_07820) - 1600511..1601497 (-) 987 WP_000161315.1 ROK family glucokinase -
  P3U35_RS07825 (P3U35_07825) - 1601494..1601697 (-) 204 WP_000087561.1 YqgQ family protein -
  P3U35_RS07830 (P3U35_07830) - 1601678..1603141 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=803425 P3U35_RS07800 WP_000776422.1 1597494..1598564(-) (comGB) [Staphylococcus aureus strain Dog044]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=803425 P3U35_RS07800 WP_000776422.1 1597494..1598564(-) (comGB) [Staphylococcus aureus strain Dog044]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATAAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1