Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3U32_RS12675 Genome accession   NZ_CP120131
Coordinates   2542272..2542802 (-) Length   176 a.a.
NCBI ID   WP_323703524.1    Uniprot ID   -
Organism   Mammaliicoccus sp. Dog046     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2533028..2542802 2542272..2542802 within 0


Gene organization within MGE regions


Location: 2533028..2542802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U32_RS12595 (P3U32_12595) - 2533028..2533462 (-) 435 WP_323703505.1 phage scaffolding protein -
  P3U32_RS12600 (P3U32_12600) - 2533473..2533928 (-) 456 WP_323703506.1 hypothetical protein -
  P3U32_RS12605 (P3U32_12605) - 2533928..2534506 (-) 579 WP_323703507.1 hypothetical protein -
  P3U32_RS12610 (P3U32_12610) - 2534517..2534978 (-) 462 WP_323703508.1 hypothetical protein -
  P3U32_RS12615 (P3U32_12615) - 2535027..2535590 (-) 564 WP_323703509.1 hypothetical protein -
  P3U32_RS12620 (P3U32_12620) - 2536334..2536534 (-) 201 WP_323703510.1 hypothetical protein -
  P3U32_RS12625 (P3U32_12625) - 2536680..2537546 (-) 867 WP_323703512.1 DnaA ATPase domain-containing protein -
  P3U32_RS12630 (P3U32_12630) - 2537561..2538394 (-) 834 WP_323703514.1 DnaD domain protein -
  P3U32_RS12635 (P3U32_12635) - 2538482..2538667 (-) 186 WP_323703515.1 hypothetical protein -
  P3U32_RS12640 (P3U32_12640) - 2538660..2538854 (-) 195 WP_323703516.1 hypothetical protein -
  P3U32_RS12645 (P3U32_12645) - 2538847..2539215 (-) 369 WP_323703517.1 hypothetical protein -
  P3U32_RS12650 (P3U32_12650) - 2539226..2539492 (-) 267 WP_323703518.1 helix-turn-helix domain-containing protein -
  P3U32_RS12655 (P3U32_12655) - 2539496..2539717 (-) 222 WP_323703520.1 helix-turn-helix transcriptional regulator -
  P3U32_RS12660 (P3U32_12660) - 2539909..2540538 (+) 630 WP_323703521.1 helix-turn-helix transcriptional regulator -
  P3U32_RS12665 (P3U32_12665) - 2540607..2541831 (+) 1225 Protein_2451 tyrosine-type recombinase/integrase -
  P3U32_RS12670 (P3U32_12670) rpsR 2541977..2542219 (-) 243 WP_323703522.1 30S ribosomal protein S18 -
  P3U32_RS12675 (P3U32_12675) ssbA 2542272..2542802 (-) 531 WP_323703524.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19673.29 Da        Isoelectric Point: 4.7512

>NTDB_id=803402 P3U32_RS12675 WP_323703524.1 2542272..2542802(-) (ssbA) [Mammaliicoccus sp. Dog046]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAVNRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNNQQSSNPF
ANANGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=803402 P3U32_RS12675 WP_323703524.1 2542272..2542802(-) (ssbA) [Mammaliicoccus sp. Dog046]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTCACATTAGCTGTAAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCAGCAGAGAATGTAAACAATTACTTATCTAAAGGAAGTCTTGCAGGTGTTGAAGGTCGTCTACAATCTCGT
AGCTATGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAACCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGCGGTAATCAGCAACAAGGTCAGAAAGCACCTTCAAATCAACAGTCAAACAATAATCAACAATCAAGTAACCCATTT
GCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.128

100

0.642
  ssb Latilactobacillus sakei subsp. sakei 23K

54.144

100

0.557
  ssb Glaesserella parasuis strain SC1401

33.166

100

0.375
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

60.227

0.364