Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJ647_RS20845 Genome accession   NZ_CP134353
Coordinates   4297358..4297894 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TUM17668     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4292358..4302894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJ647_RS20825 (RJ647_20825) soxR 4294086..4294550 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  RJ647_RS20830 (RJ647_20830) soxS 4294636..4294959 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RJ647_RS20835 (RJ647_20835) pdeC 4294962..4296548 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  RJ647_RS20840 (RJ647_20840) yjcB 4296978..4297259 (+) 282 WP_001295689.1 YjcB family protein -
  RJ647_RS20845 (RJ647_20845) ssb 4297358..4297894 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RJ647_RS20850 (RJ647_20850) uvrA 4298149..4300971 (+) 2823 WP_000357744.1 excinuclease ABC subunit UvrA Machinery gene
  RJ647_RS20855 (RJ647_20855) yjbR 4301006..4301362 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RJ647_RS20860 (RJ647_20860) yjbQ 4301366..4301782 (-) 417 WP_086977351.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RJ647_RS20865 (RJ647_20865) aphA 4301893..4302606 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=802794 RJ647_RS20845 WP_000168305.1 4297358..4297894(-) (ssb) [Escherichia coli strain TUM17668]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=802794 RJ647_RS20845 WP_000168305.1 4297358..4297894(-) (ssb) [Escherichia coli strain TUM17668]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489