NTDB

Overview

Name	ruvB	Type	Machinery gene
Locus tag	RI578_RS31970	Genome accession	NZ_CP134203
Coordinates	6968946..6970019 (+)	Length	357 a.a.
NCBI ID	WP_310874296.1	Uniprot ID	A0ABP9T9B0
Organism	Streptomyces sp. BB1-1-1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6963946..6975019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI578_RS31940 (RI578_31940)	-	6964624..6965166 (+)	543	WP_310874292.1	hypothetical protein	-
RI578_RS31945 (RI578_31945)	pdxS	6965289..6966200 (+)	912	WP_121745928.1	pyridoxal 5'-phosphate synthase lyase subunit PdxS	-
RI578_RS31950 (RI578_31950)	pdxT	6966219..6966827 (+)	609	WP_310874293.1	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	-
RI578_RS31955 (RI578_31955)	-	6966879..6967631 (+)	753	WP_121745926.1	YebC/PmpR family DNA-binding transcriptional regulator	-
RI578_RS31960 (RI578_31960)	ruvC	6967749..6968315 (+)	567	WP_310874294.1	crossover junction endodeoxyribonuclease RuvC	-
RI578_RS31965 (RI578_31965)	ruvA	6968312..6968917 (+)	606	WP_310874295.1	Holliday junction branch migration protein RuvA	-
RI578_RS31970 (RI578_31970)	ruvB	6968946..6970019 (+)	1074	WP_310874296.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RI578_RS31975 (RI578_31975)	yajC	6970195..6970707 (+)	513	WP_310874297.1	preprotein translocase subunit YajC	-
RI578_RS31980 (RI578_31980)	secD	6970840..6972636 (+)	1797	WP_310874298.1	protein translocase subunit SecD	-
RI578_RS31985 (RI578_31985)	secF	6972638..6973777 (+)	1140	WP_310874299.1	protein translocase subunit SecF	-
RI578_RS31990 (RI578_31990)	-	6973774..6974322 (+)	549	WP_310874300.1	adenine phosphoribosyltransferase	-

Sequence

Protein

Download Length: 357 a.a. Molecular weight: 37957.21 Da Isoelectric Point: 4.8153

                                >NTDB_id=802708 RI578_RS31970 WP_310874296.1 6968946..6970019(+) (ruvB) [Streptomyces sp. BB1-1-1]

MNWDDTTDTDAAGERLVGASADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTL

SMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLE

LPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYGPAELERVIHRSAGLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVR

DYAQVKADGRITQEIAAAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLL

ARTPRGRVATPAAWAHLGLTPPRSQSSGNGQQDLFGA

Nucleotide

Download Length: 1074 bp

                                >NTDB_id=802708 RI578_RS31970 WP_310874296.1 6968946..6970019(+) (ruvB) [Streptomyces sp. BB1-1-1]

ATGAACTGGGACGACACGACCGACACGGACGCCGCGGGCGAACGGCTGGTGGGTGCGTCCGCCGACGGCGAGGACCAGGC

CGTGGAGGCCGCCCTGCGCCCCAAGGACCTGGGCGAGTTCATCGGCCAGGAGAAGGTCCGCGAGCAGCTCGACCTCGTGC

TGCGCGCCGCACGCGCGCGCGGGGCGACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGCAAGACCACCCTC

TCGATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGTGACCTCGC

GGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCGAGGCCCGCCGAGGAGA

TGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGCAAGGGCCCGGGCGCCACCGCCATCCCCCTGGAG

CTGCCGCCCTTCACCCTGGTCGGCGCCACCACGCGCGCGGGACTGCTGCCGCCCCCGTTGCGCGACCGCTTCGGCTTCAC

CGCGCACATGGAGTTCTACGGACCGGCCGAACTGGAACGCGTCATCCACCGCTCGGCGGGCCTGCTCGACGTCGAGATCG

ACACCGCCGGCGCCGCGGAGATCGCCGGCCGCTCCCGCGGCACCCCCCGCATCGCCAACCGCCTGCTGCGCCGGGTCCGG

GACTACGCCCAGGTCAAGGCCGACGGCCGGATCACCCAGGAGATCGCCGCGGCCGCCCTCGCGGTCTACGAGGTCGACGC

CCGCGGCCTGGACCGGCTGGACCGGGGTGTGCTGGAGGCCCTGCTCAAGCTGTTCGGCGGCGGTCCCGTCGGCCTGTCCA

CGCTCGCCGTCGCCGTGGGGGAGGAGCGTGAGACAGTGGAAGAGGTCGCCGAACCCTTCCTCGTGAGGGAGGGGCTGCTC

GCCCGCACCCCGCGCGGACGCGTGGCGACCCCGGCCGCATGGGCGCACCTCGGCCTCACCCCGCCGCGTTCGCAGAGTTC

GGGAAACGGACAACAGGACTTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(193-266)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(32-190)

RuvB C-terminal winged helix domain (WHD_RuvB)

(268-337)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	55.152	92.437	0.51
ruvB	Synechocystis sp. PCC 6803	53.251	90.476	0.482
ruvB	Streptococcus pneumoniae TIGR4	52.16	90.756	0.473
ruvB	Streptococcus pneumoniae R6	52.16	90.756	0.473
ruvB	Streptococcus pneumoniae D39	52.16	90.756	0.473
ruvB	Helicobacter pylori 26695	50.314	89.076	0.448

Detailed information NTG0802708