Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3U69_RS04250 Genome accession   NZ_CP120083
Coordinates   870956..871354 (+) Length   132 a.a.
NCBI ID   WP_011275249.1    Uniprot ID   A0A5B2YX53
Organism   Staphylococcus haemolyticus strain Dog117_H     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 865956..876354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3U69_RS04220 (P3U69_04220) atpD 866103..867515 (+) 1413 WP_011275243.1 F0F1 ATP synthase subunit beta -
  P3U69_RS04225 (P3U69_04225) - 867536..867937 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  P3U69_RS04230 (P3U69_04230) - 868065..868298 (+) 234 WP_011275245.1 DUF1146 family protein -
  P3U69_RS04235 (P3U69_04235) murA 868403..869668 (+) 1266 WP_033079610.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P3U69_RS04240 (P3U69_04240) fabZ 869708..870145 (+) 438 WP_011275247.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P3U69_RS04245 (P3U69_04245) - 870325..870768 (-) 444 WP_011275248.1 YwpF-like family protein -
  P3U69_RS04250 (P3U69_04250) ssb 870956..871354 (+) 399 WP_011275249.1 single-stranded DNA-binding protein Machinery gene
  P3U69_RS04255 (P3U69_04255) - 871693..872400 (+) 708 WP_011275250.1 transglycosylase family protein -
  P3U69_RS04260 (P3U69_04260) tenA 872689..873378 (+) 690 WP_011275251.1 thiaminase II -
  P3U69_RS04265 (P3U69_04265) thiD 873371..874192 (+) 822 WP_016931211.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P3U69_RS04270 (P3U69_04270) thiM 874185..874976 (+) 792 WP_037571329.1 hydroxyethylthiazole kinase -
  P3U69_RS04275 (P3U69_04275) thiE 874978..875616 (+) 639 WP_037571326.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.05 Da        Isoelectric Point: 4.7942

>NTDB_id=802708 P3U69_RS04250 WP_011275249.1 870956..871354(+) (ssb) [Staphylococcus haemolyticus strain Dog117_H]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=802708 P3U69_RS04250 WP_011275249.1 870956..871354(+) (ssb) [Staphylococcus haemolyticus strain Dog117_H]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742