Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RIU97_RS32225 Genome accession   NZ_CP134201
Coordinates   7008684..7009757 (+) Length   357 a.a.
NCBI ID   WP_404961052.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7003684..7014757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS32195 (RIU97_32115) - 7004301..7004843 (+) 543 WP_404961049.1 hypothetical protein -
  RIU97_RS32200 (RIU97_32120) pdxS 7004970..7005887 (+) 918 WP_030706266.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RIU97_RS32205 (RIU97_32125) pdxT 7005895..7006488 (+) 594 WP_404961050.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RIU97_RS32210 (RIU97_32130) - 7006546..7007298 (+) 753 WP_008740481.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RIU97_RS32215 (RIU97_32135) ruvC 7007417..7007953 (+) 537 WP_361767727.1 crossover junction endodeoxyribonuclease RuvC -
  RIU97_RS32220 (RIU97_32140) ruvA 7007950..7008582 (+) 633 WP_404961051.1 Holliday junction branch migration protein RuvA -
  RIU97_RS32225 (RIU97_32145) ruvB 7008684..7009757 (+) 1074 WP_404961052.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RIU97_RS32230 (RIU97_32150) yajC 7009924..7010400 (+) 477 WP_404961053.1 preprotein translocase subunit YajC -
  RIU97_RS32235 (RIU97_32155) secD 7010554..7012347 (+) 1794 WP_404961054.1 protein translocase subunit SecD -
  RIU97_RS32240 (RIU97_32160) secF 7012351..7013406 (+) 1056 WP_404961055.1 protein translocase subunit SecF -
  RIU97_RS32245 (RIU97_32165) - 7013403..7013957 (+) 555 WP_404961056.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38149.39 Da        Isoelectric Point: 4.8286

>NTDB_id=802518 RIU97_RS32225 WP_404961052.1 7008684..7009757(+) (ruvB) [Streptomyces sp. 147326]
MNWDDETNADESERLVAASADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRD
YAQVRADGVINREVAGTALQVYEVDARGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLVPPQHGGSGSGGQQGLFGA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=802518 RIU97_RS32225 WP_404961052.1 7008684..7009757(+) (ruvB) [Streptomyces sp. 147326]
GTGAACTGGGACGACGAGACCAACGCAGACGAGAGCGAGCGACTCGTCGCGGCCTCGGCCGACGGGGAGGACACCGCCGT
CGAGGCGGCCCTGCGGCCCAAGGACCTCGGGGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTGGACCTCGTCCTGA
AGGCGGCCAGGCAGCGCGGAGCCACCGCCGACCACGTCCTGCTCTCCGGCGCGCCCGGCCTCGGCAAGACCACCCTCTCG
ATGATCATCGCGGCCGAGATGGGCGCGCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGC
CATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TCTACATGGCCATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGGGCCACCGCGATCCCGCTCGAGCTG
CCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGACTGCTGCCGCCTCCGCTGCGGGACCGTTTCGGCTTCACCGG
GCACATGGAGTTCTACGCCCCCGAGGAGCTGGAGCGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTCGAGATCGACA
CCGACGGGGCCGCCGAGATCGCCGGGCGCTCCCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGCGTACGCGAC
TACGCCCAGGTACGGGCGGACGGCGTGATCAACCGCGAGGTCGCCGGCACCGCCCTCCAGGTCTACGAGGTGGACGCGCG
CGGGCTCGACCGGCTGGACCGGGCCGTTCTTGAGGCGCTGCTCAAACTCTTCGGGGGTGGCCCCGTCGGGCTGTCCACCC
TGGCCGTGGCGGTCGGCGAGGAGCGGGAGACCGTGGAAGAGGTCGCGGAGCCGTTCCTGGTCCGCGAGGGCCTGCTCGCG
CGCACGCCCAGGGGACGGGTCGCGACGCCCGCCGCATGGGCTCACCTGGGGCTTGTGCCGCCGCAGCACGGGGGAAGTGG
ATCAGGCGGACAACAGGGCTTGTTCGGGGCCTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

RuvB AAA lid domain (AAA_lid_4)

(192-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.474

92.717

0.496
  ruvB Streptococcus pneumoniae TIGR4

52.16

90.756

0.473
  ruvB Streptococcus pneumoniae R6

52.16

90.756

0.473
  ruvB Streptococcus pneumoniae D39

52.16

90.756

0.473
  ruvB Synechocystis sp. PCC 6803

52.548

87.955

0.462
  ruvB Helicobacter pylori 26695

49.53

89.356

0.443