Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   RIU97_RS18765 Genome accession   NZ_CP134201
Coordinates   4182961..4183632 (+) Length   223 a.a.
NCBI ID   WP_404958232.1    Uniprot ID   -
Organism   Streptomyces sp. 147326     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4177961..4188632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIU97_RS18740 (RIU97_18700) - 4178258..4178647 (+) 390 WP_404958224.1 nuclear transport factor 2 family protein -
  RIU97_RS18745 (RIU97_18705) - 4178691..4179167 (-) 477 WP_404962875.1 HIT family protein -
  RIU97_RS18750 (RIU97_18710) - 4179363..4180427 (+) 1065 WP_404958226.1 alpha/beta hydrolase -
  RIU97_RS18755 (RIU97_18715) - 4180420..4181619 (+) 1200 WP_404958228.1 acyltransferase -
  RIU97_RS18760 (RIU97_18720) - 4181630..4182964 (+) 1335 WP_404958230.1 sensor histidine kinase -
  RIU97_RS18765 (RIU97_18725) vraR 4182961..4183632 (+) 672 WP_404958232.1 response regulator Regulator
  RIU97_RS18770 (RIU97_18730) - 4183740..4185071 (+) 1332 WP_404958234.1 sensor histidine kinase -
  RIU97_RS18775 (RIU97_18735) vraR 4185068..4185727 (+) 660 WP_404958236.1 response regulator Regulator
  RIU97_RS18780 (RIU97_18740) - 4185781..4186989 (+) 1209 WP_404958238.1 cytochrome P450 -
  RIU97_RS18785 (RIU97_18745) - 4187044..4187562 (-) 519 WP_404958240.1 hypothetical protein -
  RIU97_RS18790 (RIU97_18750) - 4187559..4188410 (-) 852 WP_404962876.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23716.39 Da        Isoelectric Point: 4.5997

>NTDB_id=802486 RIU97_RS18765 WP_404958232.1 4182961..4183632(+) (vraR) [Streptomyces sp. 147326]
MSTPIKVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGADAVAKVAELAPDVVLMDIRMPGMGGIEATSVITGVPDATV
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRMGAPRAPSRARIDELTE
RETEVLSLVAQGLSNAEIAAHLTVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=802486 RIU97_RS18765 WP_404958232.1 4182961..4183632(+) (vraR) [Streptomyces sp. 147326]
ATGAGCACCCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTGCGGCAGGGCTTCACCGTGCTCCTCAACGCGCA
GCCCGACATAGAGGTCGTGGGACAGGCGGTGGACGGGGCCGACGCCGTGGCGAAGGTCGCCGAGCTGGCCCCGGACGTGG
TGCTGATGGACATCCGCATGCCGGGAATGGGCGGTATCGAGGCCACGTCCGTCATCACCGGGGTTCCCGATGCCACCGTG
AAGGTGCTGGTGCTGACCACCTTCGATCTCGACGAGTACGTGTACGAGGCGCTGCGGGCCGGGGCCTCCGGGTTCCTGCT
GAAGGACGCCTCGGCCGACCAGCTCGCCGAGGCGGTGCGGGTGGTGGCGGCCGGCGAGGCGCTGCTCTCGCCGAACATCA
CGAAGCGGCTGATCACGGAGTTCTCGCGGATGGGGGCGCCGCGGGCGCCGTCGCGGGCCCGGATCGACGAACTGACCGAG
CGGGAAACCGAGGTGCTGTCGCTCGTGGCGCAGGGCCTGTCGAATGCGGAGATCGCTGCCCACCTGACGGTGGCGGAGCA
GACGGTGAAGACGCATGTCGGTCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGGCGGCGGTGTTCGCGTACG
AGACCGGGCTGGTCCGGCCGGCCGGATACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.749

98.206

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

41.41

100

0.422