Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RIF20_RS05405 Genome accession   NZ_CP134068
Coordinates   1055442..1056446 (+) Length   334 a.a.
NCBI ID   WP_001005769.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050442..1061446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIF20_RS05370 (RIF20_05370) mreD 1050456..1050986 (+) 531 WP_001259923.1 rod shape-determining protein MreD -
  RIF20_RS05375 (RIF20_05375) rplU 1051222..1051530 (+) 309 WP_000457384.1 50S ribosomal protein L21 -
  RIF20_RS05380 (RIF20_05380) - 1051536..1051856 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  RIF20_RS05385 (RIF20_05385) rpmA 1051868..1052152 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  RIF20_RS05390 (RIF20_05390) obgE 1053034..1054326 (+) 1293 WP_000496100.1 GTPase ObgE -
  RIF20_RS05395 (RIF20_05395) - 1054339..1054794 (+) 456 WP_000368902.1 ACT domain-containing protein -
  RIF20_RS05400 (RIF20_05400) ruvA 1054808..1055410 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  RIF20_RS05405 (RIF20_05405) ruvB 1055442..1056446 (+) 1005 WP_001005769.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RIF20_RS05410 (RIF20_05410) queA 1056448..1057473 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RIF20_RS05415 (RIF20_05415) tgt 1057496..1058635 (+) 1140 WP_031790757.1 tRNA guanosine(34) transglycosylase Tgt -
  RIF20_RS05420 (RIF20_05420) yajC 1058654..1058914 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37587.90 Da        Isoelectric Point: 5.3152

>NTDB_id=802249 RIF20_RS05405 WP_001005769.1 1055442..1056446(+) (ruvB) [Staphylococcus aureus strain 63]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVGQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=802249 RIF20_RS05405 WP_001005769.1 1055442..1056446(+) (ruvB) [Staphylococcus aureus strain 63]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGGTCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGGATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

RuvB AAA lid domain (AAA_lid_4)

(182-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.644

97.605

0.641
  ruvB Streptococcus pneumoniae TIGR4

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae R6

57.576

98.802

0.569
  ruvB Streptococcus pneumoniae D39

57.576

98.802

0.569
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.438

95.808

0.512