Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   RI644_RS12790 Genome accession   NZ_CP134058
Coordinates   1691312..1691899 (+) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   -
Organism   Vibrio cholerae strain VIC11-A     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686312..1696899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI644_RS12770 (RI644_12770) panP 1686634..1688280 (-) 1647 WP_000253201.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  RI644_RS12775 (RI644_12775) - 1688390..1688899 (-) 510 WP_000826868.1 hypothetical protein -
  RI644_RS12780 (RI644_12780) - 1689088..1689993 (-) 906 WP_000948497.1 lysine exporter LysO family protein -
  RI644_RS12785 (RI644_12785) - 1690014..1690934 (-) 921 WP_000019000.1 HDOD domain-containing protein -
  RI644_RS12790 (RI644_12790) tfoX 1691312..1691899 (+) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  RI644_RS12795 (RI644_12795) - 1691995..1692543 (-) 549 WP_001232641.1 hypothetical protein -
  RI644_RS12800 (RI644_12800) - 1692734..1693231 (-) 498 WP_001031964.1 response regulator -
  RI644_RS12805 (RI644_12805) - 1693228..1695183 (-) 1956 WP_001082992.1 ATP-binding protein -
  RI644_RS12810 (RI644_12810) - 1695406..1696671 (+) 1266 WP_000835928.1 YdgA family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=802113 RI644_RS12790 WP_001005366.1 1691312..1691899(+) (tfoX) [Vibrio cholerae strain VIC11-A]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=802113 RI644_RS12790 WP_001005366.1 1691312..1691899(+) (tfoX) [Vibrio cholerae strain VIC11-A]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATTATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.