Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RHT75_RS22210 Genome accession   NZ_CP133927
Coordinates   4604974..4605510 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain M22546     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4599974..4610510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHT75_RS22190 (RHT75_22190) soxR 4601703..4602167 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  RHT75_RS22195 (RHT75_22195) soxS 4602253..4602576 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RHT75_RS22200 (RHT75_22200) pdeC 4602579..4604165 (-) 1587 WP_001576468.1 c-di-GMP phosphodiesterase PdeC -
  RHT75_RS22205 (RHT75_22205) yjcB 4604594..4604875 (+) 282 WP_001296643.1 YjcB family protein -
  RHT75_RS22210 (RHT75_22210) ssb 4604974..4605510 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RHT75_RS22215 (RHT75_22215) uvrA 4605765..4608587 (+) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  RHT75_RS22220 (RHT75_22220) yjbR 4608622..4608978 (-) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  RHT75_RS22225 (RHT75_22225) yjbQ 4608982..4609398 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RHT75_RS22230 (RHT75_22230) aphA 4609509..4610222 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=801860 RHT75_RS22210 WP_000168305.1 4604974..4605510(-) (ssb) [Escherichia coli strain M22546]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=801860 RHT75_RS22210 WP_000168305.1 4604974..4605510(-) (ssb) [Escherichia coli strain M22546]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489