Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3T93_RS12270 Genome accession   NZ_CP119997
Coordinates   2472759..2473268 (-) Length   169 a.a.
NCBI ID   WP_064264444.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain Dog166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2467759..2478268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T93_RS12240 (P3T93_12245) - 2468137..2468274 (-) 138 WP_196760390.1 hypothetical protein -
  P3T93_RS12245 (P3T93_12250) - 2468342..2468686 (-) 345 WP_064209652.1 DUF4260 domain-containing protein -
  P3T93_RS12250 (P3T93_12255) - 2469245..2469790 (-) 546 WP_064264440.1 hypothetical protein -
  P3T93_RS12255 (P3T93_12260) - 2470298..2470513 (+) 216 WP_064264441.1 hypothetical protein -
  P3T93_RS12260 (P3T93_12265) - 2471978..2472211 (+) 234 WP_064264443.1 hypothetical protein -
  P3T93_RS12265 (P3T93_12270) rpsR 2472468..2472710 (-) 243 WP_042737618.1 30S ribosomal protein S18 -
  P3T93_RS12270 (P3T93_12275) ssbA 2472759..2473268 (-) 510 WP_064264444.1 single-stranded DNA-binding protein Machinery gene
  P3T93_RS12275 (P3T93_12280) rpsF 2473287..2473592 (-) 306 WP_019469843.1 30S ribosomal protein S6 -
  P3T93_RS12280 (P3T93_12285) - 2473983..2474780 (+) 798 WP_064264445.1 GH25 family lysozyme -
  P3T93_RS12285 (P3T93_12290) ychF 2475066..2476163 (-) 1098 WP_019469841.1 redox-regulated ATPase YchF -
  P3T93_RS12290 (P3T93_12295) - 2476177..2476380 (-) 204 WP_064264446.1 DUF951 domain-containing protein -
  P3T93_RS12295 (P3T93_12300) - 2476401..2477285 (-) 885 WP_323701731.1 mechanosensitive ion channel family protein -
  P3T93_RS12300 (P3T93_12305) - 2477695..2478063 (-) 369 WP_026034821.1 DUF2294 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18889.45 Da        Isoelectric Point: 4.9163

>NTDB_id=801446 P3T93_RS12270 WP_064264444.1 2472759..2473268(-) (ssbA) [Staphylococcus cohnii strain Dog166]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNSFQNFGGQQSGQNTSSYQNNNNNNQSNNNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=801446 P3T93_RS12270 WP_064264444.1 2472759..2473268(-) (ssbA) [Staphylococcus cohnii strain Dog166]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGCGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAATAACTACTTATTCAAAGGTAGTCTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTACGAAAACCAAGAAGGTCGTCGTATATTTGTAACTGAAGTTGTCTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
CCAAAATCAGCGTCATGCTCAAGAAGGAAATAATAGTTTCCAAAATTTTGGTGGACAACAATCCGGACAAAATACGTCTT
CTTATCAAAACAATAACAACAATAATCAATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGCCCTATT
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.639
  ssb Latilactobacillus sakei subsp. sakei 23K

56.571

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

65.089

0.385
  ssb Glaesserella parasuis strain SC1401

32.979

100

0.367