Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RHS39_RS10895 Genome accession   NZ_CP133900
Coordinates   2345081..2347111 (-) Length   676 a.a.
NCBI ID   WP_025787599.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2340081..2352111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS10870 (RHS39_10870) moaB 2340177..2340689 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  RHS39_RS10875 (RHS39_10875) moaA 2340792..2341781 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  RHS39_RS10880 (RHS39_10880) - 2342077..2342970 (+) 894 WP_005494500.1 YvcK family protein -
  RHS39_RS10885 (RHS39_10885) luxU 2343047..2343385 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  RHS39_RS10890 (RHS39_10890) luxO 2343388..2344791 (-) 1404 WP_025787598.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RHS39_RS10895 (RHS39_10895) uvrB 2345081..2347111 (-) 2031 WP_025787599.1 excinuclease ABC subunit UvrB Machinery gene
  RHS39_RS10905 (RHS39_10905) rsxA 2348102..2348680 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  RHS39_RS10910 (RHS39_10910) rsxB 2348684..2349280 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -
  RHS39_RS10915 (RHS39_10915) rsxC 2349289..2352000 (+) 2712 WP_042775716.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77014.67 Da        Isoelectric Point: 4.8615

>NTDB_id=801416 RHS39_RS10895 WP_025787599.1 2345081..2347111(-) (uvrB) [Vibrio parahaemolyticus strain TW01]
MSKVYELASEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=801416 RHS39_RS10895 WP_025787599.1 2345081..2347111(-) (uvrB) [Vibrio parahaemolyticus strain TW01]
ATGAGTAAAGTTTATGAACTGGCCTCTGAGTATCAACCATCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGCCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTATCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTAGAACGAA
AAGACGCCATCATCGTCGCTTCGGTCTCAGCCATTTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCTTAGCGGAACTTCAATACTCTCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATCGACATATTCCCAGCTGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAAGTGGATTGTATCAGTGTGTTTGACCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTCTGCTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGT
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACGCAGGTCGATGATTTGTTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAGCGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAGCATGATGTTCGTGTTCGCTATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTACGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCGCGAAACATCGAGGGTAAAGCGATTCTTTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGCTAAAACGTAATATCAAGGATATTATGGAGTTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTCGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Type III restriction enzyme, res subunit (ResIII)

(13-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.706

98.521

0.549
  uvrB Streptococcus pneumoniae R6

55.706

98.521

0.549
  uvrB Streptococcus pneumoniae D39

55.706

98.521

0.549