Detailed information NTG0801396

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RHS39_RS05360
• Genome accession: NZ_CP133900
• Coordinates: 1140214..1141218 (+)
• Length: 334 a.a.
• NCBI ID: WP_005457270.1
• Uniprot ID: Q87QU7
• Organism: Vibrio parahaemolyticus strain TW01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1135214..1146218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHS39_RS05340 (RHS39_05340)	aspS	1135498..1137276 (+)	1779	WP_005483110.1	aspartate--tRNA ligase	-
RHS39_RS05345 (RHS39_05345)	ruvC	1137405..1137926 (+)	522	WP_005457261.1	crossover junction endodeoxyribonuclease RuvC	-
RHS39_RS05350 (RHS39_05350)	-	1138048..1139499 (+)	1452	WP_025789099.1	methyl-accepting chemotaxis protein	-
RHS39_RS05355 (RHS39_05355)	ruvA	1139578..1140192 (+)	615	WP_005486097.1	Holliday junction branch migration protein RuvA	-
RHS39_RS05360 (RHS39_05360)	ruvB	1140214..1141218 (+)	1005	WP_005457270.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RHS39_RS05365 (RHS39_05365)	cydA	1141679..1143265 (+)	1587	WP_005457265.1	cytochrome ubiquinol oxidase subunit I	-
RHS39_RS05370 (RHS39_05370)	cydB	1143283..1144419 (+)	1137	WP_005483614.1	cytochrome d ubiquinol oxidase subunit II	-
RHS39_RS05375 (RHS39_05375)	cydX	1144432..1144539 (+)	108	WP_000270284.1	cytochrome bd-I oxidase subunit CydX	-
RHS39_RS05380 (RHS39_05380)	ybgE	1144532..1144834 (+)	303	WP_025789100.1	cyd operon protein YbgE	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37226.63 Da
• Isoelectric Point: 4.7025

>NTDB_id=801396 RHS39_RS05360 WP_005457270.1 1140214..1141218(+) (ruvB) [Vibrio parahaemolyticus strain TW01]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide

• Length: 1005 bp

>NTDB_id=801396 RHS39_RS05360 WP_005457270.1 1140214..1141218(+) (ruvB) [Vibrio parahaemolyticus strain TW01]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAG
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTTGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAACCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAACATTGTTCAACGCAGTGCAGATTGTCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCGAACCGTCTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTCGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAGAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (186-259)

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

3D structure

• AlphaFold DB: Q87QU7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.486	98.503	0.596
ruvB	Streptococcus pneumoniae TIGR4	58.824	96.707	0.569
ruvB	Streptococcus pneumoniae R6	58.824	96.707	0.569
ruvB	Streptococcus pneumoniae D39	58.824	96.707	0.569
ruvB	Synechocystis sp. PCC 6803	55.987	92.515	0.518
ruvB	Helicobacter pylori 26695	54.276	91.018	0.494