Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3G59_RS25900 Genome accession   NZ_CP119967
Coordinates   5787337..5787861 (-) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas sp. A34-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5782337..5792861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3G59_RS25870 - 5782585..5783253 (+) 669 WP_242206876.1 YjfI family protein -
  P3G59_RS25875 - 5783271..5783969 (+) 699 WP_186621716.1 PspA/IM30 family protein -
  P3G59_RS25880 - 5784184..5784834 (+) 651 WP_277759497.1 DUF2491 family protein -
  P3G59_RS25885 - 5784850..5785275 (+) 426 WP_277759498.1 DUF350 domain-containing protein -
  P3G59_RS25890 - 5785293..5785985 (+) 693 WP_277759499.1 DUF1190 domain-containing protein -
  P3G59_RS25895 - 5785988..5787145 (+) 1158 WP_277759500.1 glutathionylspermidine synthase family protein -
  P3G59_RS25900 ssb 5787337..5787861 (-) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  P3G59_RS25905 - 5787871..5789268 (-) 1398 WP_277759501.1 MFS transporter -
  P3G59_RS25910 uvrA 5789460..5792294 (+) 2835 WP_007918441.1 excinuclease ABC subunit UvrA -
  P3G59_RS25915 bfr 5792360..5792827 (-) 468 WP_007918444.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=801259 P3G59_RS25900 WP_008081898.1 5787337..5787861(-) (ssb) [Pseudomonas sp. A34-9]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=801259 P3G59_RS25900 WP_008081898.1 5787337..5787861(-) (ssb) [Pseudomonas sp. A34-9]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCGCAA
CCGGCGCCGGATTTCGACAGCTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489