Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3F89_RS00090 Genome accession   NZ_CP119875
Coordinates   15247..15759 (+) Length   170 a.a.
NCBI ID   WP_033682562.1    Uniprot ID   -
Organism   Bacillus tropicus strain T36S-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10247..20759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3F89_RS00060 (P3F89_00060) spo0J 10696..11547 (+) 852 WP_001051839.1 stage 0 sporulation protein Spo0J -
  P3F89_RS00065 (P3F89_00065) yyaC 11568..12164 (-) 597 WP_098524131.1 spore protease YyaC -
  P3F89_RS00070 (P3F89_00070) - 12423..13304 (+) 882 WP_000365105.1 mechanosensitive ion channel family protein -
  P3F89_RS00075 (P3F89_00075) - 13325..13522 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  P3F89_RS00080 (P3F89_00080) ychF 13638..14738 (+) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  P3F89_RS00085 (P3F89_00085) rpsF 14930..15220 (+) 291 WP_001233780.1 30S ribosomal protein S6 -
  P3F89_RS00090 (P3F89_00090) ssbA 15247..15759 (+) 513 WP_033682562.1 single-stranded DNA-binding protein Machinery gene
  P3F89_RS00095 (P3F89_00095) rpsR 15805..16038 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  P3F89_RS00100 (P3F89_00100) - 16119..17054 (+) 936 WP_033691411.1 YybS family protein -
  P3F89_RS00105 (P3F89_00105) - 17133..19106 (+) 1974 WP_001977512.1 DHH family phosphoesterase -
  P3F89_RS00110 (P3F89_00110) rplI 19103..19549 (+) 447 WP_000864230.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18524.32 Da        Isoelectric Point: 4.9327

>NTDB_id=801189 P3F89_RS00090 WP_033682562.1 15247..15759(+) (ssbA) [Bacillus tropicus strain T36S-23]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=801189 P3F89_RS00090 WP_033682562.1 15247..15759(+) (ssbA) [Bacillus tropicus strain T36S-23]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGAAACTCTGGATTTACAAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCTGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

36.872

100

0.388