Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P3S72_RS27130 Genome accession   NZ_CP119772
Coordinates   5855878..5856393 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas sp. D3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5850878..5861393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S72_RS27105 (P3S72_27100) - 5851191..5852075 (-) 885 WP_276195067.1 sugar nucleotide-binding protein -
  P3S72_RS27110 (P3S72_27105) - 5852306..5853277 (-) 972 WP_276195068.1 GlxA family transcriptional regulator -
  P3S72_RS27115 (P3S72_27110) - 5853374..5853934 (+) 561 WP_276195069.1 cysteine hydrolase family protein -
  P3S72_RS27120 (P3S72_27115) tam 5853956..5854717 (-) 762 WP_276195070.1 trans-aconitate 2-methyltransferase -
  P3S72_RS27125 (P3S72_27120) - 5854971..5855795 (+) 825 WP_276195071.1 alpha/beta hydrolase -
  P3S72_RS27130 (P3S72_27125) ssb 5855878..5856393 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  P3S72_RS27135 (P3S72_27130) - 5856403..5857797 (-) 1395 WP_247396028.1 MFS transporter -
  P3S72_RS27140 (P3S72_27135) uvrA 5857976..5860810 (+) 2835 WP_253399580.1 excinuclease ABC subunit UvrA -
  P3S72_RS27145 (P3S72_27140) bfr 5860877..5861341 (-) 465 WP_247396024.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=801120 P3S72_RS27130 WP_003232445.1 5855878..5856393(-) (ssb) [Pseudomonas sp. D3]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=801120 P3S72_RS27130 WP_003232445.1 5855878..5856393(-) (ssb) [Pseudomonas sp. D3]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAAGTGGCGGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAGCCGCAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCTCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474