Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG643_RS18660 Genome accession   NZ_CP133753
Coordinates   3974562..3975059 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain ZYPA187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3969562..3980059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG643_RS18640 (RG643_18635) pchD 3970346..3971989 (+) 1644 WP_003114688.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  RG643_RS18645 (RG643_18640) pchC 3971986..3972741 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  RG643_RS18650 (RG643_18645) pchB 3972741..3973046 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  RG643_RS18655 (RG643_18650) pchA 3973043..3974473 (+) 1431 WP_034055343.1 isochorismate synthase PchA -
  RG643_RS18660 (RG643_18655) ssb 3974562..3975059 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  RG643_RS18665 (RG643_18660) - 3975076..3976464 (-) 1389 WP_003103910.1 MFS transporter -
  RG643_RS18670 (RG643_18665) uvrA 3976678..3979515 (+) 2838 WP_003118151.1 excinuclease ABC subunit UvrA Machinery gene
  RG643_RS18675 (RG643_18670) bfr 3979587..3980051 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=800796 RG643_RS18660 WP_003114685.1 3974562..3975059(-) (ssb) [Pseudomonas aeruginosa strain ZYPA187]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=800796 RG643_RS18660 WP_003114685.1 3974562..3975059(-) (ssb) [Pseudomonas aeruginosa strain ZYPA187]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515