Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RFN65_RS17365 Genome accession   NZ_CP133703
Coordinates   3358838..3359968 (-) Length   376 a.a.
NCBI ID   WP_309529808.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353838..3364968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS17320 (RFN65_17320) cotJC 3353895..3354464 (-) 570 WP_003233850.1 spore coat protein CotJC -
  RFN65_RS17325 (RFN65_17325) cotJB 3354479..3354742 (-) 264 WP_003219491.1 spore coat protein CotJB -
  RFN65_RS17330 (RFN65_17330) cotJA 3354726..3354974 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  RFN65_RS17335 (RFN65_17335) yesF 3355101..3355969 (-) 869 Protein_3416 NAD-dependent epimerase/dehydratase family protein -
  RFN65_RS17340 (RFN65_17340) yesE 3355966..3356409 (-) 444 WP_309529806.1 nuclear transport factor 2 family protein -
  RFN65_RS17345 (RFN65_17345) yezE 3356488..3357072 (-) 585 WP_181218504.1 TetR/AcrR family transcriptional regulator -
  RFN65_RS17350 (RFN65_17350) yeeK 3357186..3357662 (-) 477 WP_309529807.1 spore coat protein YeeK -
  RFN65_RS17355 (RFN65_17355) yeeI 3357796..3358515 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RFN65_RS17360 (RFN65_17360) phrH 3358675..3358848 (-) 174 WP_015482915.1 phosphatase RapH inhibitor PhrH -
  RFN65_RS17365 (RFN65_17365) rapC 3358838..3359968 (-) 1131 WP_309529808.1 response regulator aspartate phosphatase RapH Regulator
  RFN65_RS17370 (RFN65_17370) - 3360111..3360941 (-) 831 Protein_3423 hypothetical protein -
  RFN65_RS21230 - 3361180..3361317 (-) 138 Protein_3424 hypothetical protein -
  RFN65_RS17380 (RFN65_17380) - 3361466..3362386 (-) 921 WP_095252651.1 DUF5655 domain-containing protein -
  RFN65_RS17385 (RFN65_17385) - 3362399..3362737 (-) 339 WP_309529810.1 hypothetical protein -
  RFN65_RS17390 (RFN65_17390) yeeF 3362904..3364913 (+) 2010 WP_309529811.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43871.14 Da        Isoelectric Point: 5.8846

>NTDB_id=800191 RFN65_RS17365 WP_309529808.1 3358838..3359968(-) (rapC) [Bacillus subtilis strain CP35]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HVLQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=800191 RFN65_RS17365 WP_309529808.1 3358838..3359968(-) (rapC) [Bacillus subtilis strain CP35]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATGTTCTTCAAGCCTTGGACATTTATCAAAACAATCCCCTATACAGCATTAGAACCATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTTTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTGTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.16

100

0.402
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396