Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P1K87_RS19470 Genome accession   NZ_CP119596
Coordinates   3925033..3925551 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3925033..3934805 3925033..3925551 within 0


Gene organization within MGE regions


Location: 3925033..3934805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS19470 (P1K87_19470) ssbA 3925033..3925551 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  P1K87_RS19475 (P1K87_19475) rpsF 3925591..3925878 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  P1K87_RS19480 (P1K87_19480) ychF 3925990..3927090 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  P1K87_RS19485 (P1K87_19485) - 3927217..3929220 (-) 2004 WP_032875323.1 molybdopterin-dependent oxidoreductase -
  P1K87_RS19490 (P1K87_19490) - 3929267..3929473 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  P1K87_RS19495 (P1K87_19495) - 3929559..3930584 (-) 1026 WP_087920784.1 hypothetical protein -
  P1K87_RS19500 (P1K87_19500) - 3930728..3931231 (+) 504 WP_032875313.1 GNAT family N-acetyltransferase -
  P1K87_RS19505 (P1K87_19505) yyaC 3931406..3932020 (+) 615 WP_032875310.1 spore protease YyaC -
  P1K87_RS19510 (P1K87_19510) - 3932050..3932901 (-) 852 WP_032875307.1 ParB/RepB/Spo0J family partition protein -
  P1K87_RS19515 (P1K87_19515) soj 3932894..3933655 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  P1K87_RS19520 (P1K87_19520) noc 3933954..3934805 (-) 852 WP_007615083.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=799931 P1K87_RS19470 WP_007615071.1 3925033..3925551(-) (ssbA) [Bacillus amyloliquefaciens strain MG-2]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=799931 P1K87_RS19470 WP_007615071.1 3925033..3925551(-) (ssbA) [Bacillus amyloliquefaciens strain MG-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372