Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P1K87_RS11780 Genome accession   NZ_CP119596
Coordinates   2452999..2453307 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2447999..2458307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS11730 (P1K87_11730) sinR 2448162..2448497 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  P1K87_RS11735 (P1K87_11735) - 2448545..2449330 (-) 786 WP_032874027.1 TasA family protein -
  P1K87_RS11740 (P1K87_11740) - 2449395..2449979 (-) 585 WP_032874025.1 signal peptidase I -
  P1K87_RS11745 (P1K87_11745) tapA 2449951..2450622 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  P1K87_RS11750 (P1K87_11750) - 2450881..2451210 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  P1K87_RS11755 (P1K87_11755) - 2451251..2451430 (-) 180 WP_022552966.1 YqzE family protein -
  P1K87_RS11760 (P1K87_11760) comGG 2451487..2451864 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  P1K87_RS11765 (P1K87_11765) comGF 2451865..2452365 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  P1K87_RS11770 (P1K87_11770) comGE 2452274..2452588 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  P1K87_RS11775 (P1K87_11775) comGD 2452572..2453009 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  P1K87_RS11780 (P1K87_11780) comGC 2452999..2453307 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  P1K87_RS11785 (P1K87_11785) comGB 2453312..2454349 (-) 1038 WP_032874014.1 competence type IV pilus assembly protein ComGB Machinery gene
  P1K87_RS11790 (P1K87_11790) comGA 2454336..2455406 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  P1K87_RS11795 (P1K87_11795) - 2455603..2456553 (-) 951 WP_032874012.1 magnesium transporter CorA family protein -
  P1K87_RS11800 (P1K87_11800) - 2456699..2458000 (+) 1302 WP_032874010.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=799901 P1K87_RS11780 WP_003153087.1 2452999..2453307(-) (comGC) [Bacillus amyloliquefaciens strain MG-2]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=799901 P1K87_RS11780 WP_003153087.1 2452999..2453307(-) (comGC) [Bacillus amyloliquefaciens strain MG-2]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402