Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P1K87_RS11730 Genome accession   NZ_CP119596
Coordinates   2448162..2448497 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2443162..2453497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS11710 (P1K87_11710) gcvT 2443769..2444869 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  P1K87_RS11715 (P1K87_11715) - 2445292..2446962 (+) 1671 WP_032874031.1 SNF2-related protein -
  P1K87_RS11720 (P1K87_11720) - 2446984..2447778 (+) 795 WP_007612541.1 YqhG family protein -
  P1K87_RS11725 (P1K87_11725) sinI 2447955..2448128 (+) 174 WP_032874029.1 anti-repressor SinI family protein Regulator
  P1K87_RS11730 (P1K87_11730) sinR 2448162..2448497 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  P1K87_RS11735 (P1K87_11735) - 2448545..2449330 (-) 786 WP_032874027.1 TasA family protein -
  P1K87_RS11740 (P1K87_11740) - 2449395..2449979 (-) 585 WP_032874025.1 signal peptidase I -
  P1K87_RS11745 (P1K87_11745) tapA 2449951..2450622 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  P1K87_RS11750 (P1K87_11750) - 2450881..2451210 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  P1K87_RS11755 (P1K87_11755) - 2451251..2451430 (-) 180 WP_022552966.1 YqzE family protein -
  P1K87_RS11760 (P1K87_11760) comGG 2451487..2451864 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  P1K87_RS11765 (P1K87_11765) comGF 2451865..2452365 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  P1K87_RS11770 (P1K87_11770) comGE 2452274..2452588 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  P1K87_RS11775 (P1K87_11775) comGD 2452572..2453009 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  P1K87_RS11780 (P1K87_11780) comGC 2452999..2453307 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=799897 P1K87_RS11730 WP_003153104.1 2448162..2448497(+) (sinR) [Bacillus amyloliquefaciens strain MG-2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=799897 P1K87_RS11730 WP_003153104.1 2448162..2448497(+) (sinR) [Bacillus amyloliquefaciens strain MG-2]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991