Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KYK12_RS01255 Genome accession   NZ_CP133657
Coordinates   273134..273898 (-) Length   254 a.a.
NCBI ID   WP_032218476.1    Uniprot ID   -
Organism   Escherichia coli strain CEC15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 268134..278898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYK12_RS01230 (KYK12_001230) yhhJ 269990..271114 (+) 1125 WP_001314210.1 ABC transporter permease -
  KYK12_RS01235 (KYK12_001235) - 271218..271448 (+) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  KYK12_RS01240 (KYK12_001240) - 271445..271804 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  KYK12_RS01245 (KYK12_001245) nikR 271924..272325 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  KYK12_RS01250 (KYK12_001250) nikE 272331..273137 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  KYK12_RS01255 (KYK12_001255) amiE 273134..273898 (-) 765 WP_032218476.1 nickel import ATP-binding protein NikD Regulator
  KYK12_RS01260 (KYK12_001260) nikC 273898..274731 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  KYK12_RS01265 (KYK12_001265) nikB 274728..275672 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  KYK12_RS01270 (KYK12_001270) nikA 275672..277246 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  KYK12_RS01275 (KYK12_001275) acpT 277357..277944 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26863.44 Da        Isoelectric Point: 6.5992

>NTDB_id=799900 KYK12_RS01255 WP_032218476.1 273134..273898(-) (amiE) [Escherichia coli strain CEC15]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCTATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=799900 KYK12_RS01255 WP_032218476.1 273134..273898(-) (amiE) [Escherichia coli strain CEC15]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCACCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398