Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   RFN60_RS14025 Genome accession   NZ_CP133653
Coordinates   2698646..2699341 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain CP38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2693646..2704341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS14000 (RFN60_14000) minD 2694582..2695388 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  RFN60_RS14005 (RFN60_14005) minC 2695390..2696070 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  RFN60_RS14010 (RFN60_14010) mreD 2696123..2696641 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  RFN60_RS14015 (RFN60_14015) mreC 2696638..2697510 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  RFN60_RS14020 (RFN60_14020) mreB 2697541..2698554 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  RFN60_RS14025 (RFN60_14025) ysxA/radC 2698646..2699341 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  RFN60_RS14030 (RFN60_14030) maf 2699378..2699947 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  RFN60_RS14035 (RFN60_14035) spoIIB 2700100..2701098 (-) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  RFN60_RS14040 (RFN60_14040) comC 2701232..2701978 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  RFN60_RS14045 (RFN60_14045) folC 2702120..2703412 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=799854 RFN60_RS14025 WP_003246034.1 2698646..2699341(-) (ysxA/radC) [Bacillus subtilis strain CP38]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=799854 RFN60_RS14025 WP_003246034.1 2698646..2699341(-) (ysxA/radC) [Bacillus subtilis strain CP38]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCTAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424