Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | P1I87_RS01455 | Genome accession | NZ_CP119576 |
| Coordinates | 249393..249884 (+) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain Guangzhou-SAG092 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 230258..249884 | 249393..249884 | within | 0 |
Gene organization within MGE regions
Location: 230258..249884
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1I87_RS01345 (P1I87_01345) | - | 230258..231412 (-) | 1155 | WP_050147812.1 | site-specific integrase | - |
| P1I87_RS01350 (P1I87_01350) | - | 231467..231985 (-) | 519 | WP_050147813.1 | helix-turn-helix transcriptional regulator | - |
| P1I87_RS01355 (P1I87_01355) | - | 232138..232422 (+) | 285 | WP_001287945.1 | hypothetical protein | - |
| P1I87_RS01360 (P1I87_01360) | - | 232431..233255 (+) | 825 | WP_228112245.1 | DnaD domain protein | - |
| P1I87_RS01365 (P1I87_01365) | - | 233270..233560 (+) | 291 | WP_153204977.1 | DUF5962 family protein | - |
| P1I87_RS01370 (P1I87_01370) | - | 233553..233915 (+) | 363 | WP_153204973.1 | transposase | - |
| P1I87_RS01375 (P1I87_01375) | - | 233915..234271 (+) | 357 | WP_153204971.1 | transposase | - |
| P1I87_RS01380 (P1I87_01380) | - | 234837..235130 (+) | 294 | Protein_216 | methylase | - |
| P1I87_RS01385 (P1I87_01385) | - | 235186..235866 (-) | 681 | WP_001015311.1 | IS6-like element IS1216 family transposase | - |
| P1I87_RS01390 (P1I87_01390) | dinB | 235958..237052 (+) | 1095 | WP_000904560.1 | DNA polymerase IV | - |
| P1I87_RS01395 (P1I87_01395) | - | 237123..237605 (-) | 483 | WP_000255475.1 | hypothetical protein | - |
| P1I87_RS01400 (P1I87_01400) | - | 237719..240139 (-) | 2421 | WP_000451609.1 | ATP-dependent RecD-like DNA helicase | - |
| P1I87_RS01405 (P1I87_01405) | lepB | 240268..240861 (-) | 594 | WP_000657514.1 | signal peptidase I | - |
| P1I87_RS01410 (P1I87_01410) | rnhC | 240877..241770 (-) | 894 | WP_001092527.1 | ribonuclease HIII | - |
| P1I87_RS01415 (P1I87_01415) | zapA | 241881..242192 (+) | 312 | WP_000448289.1 | cell division protein ZapA | - |
| P1I87_RS01420 (P1I87_01420) | - | 242195..242737 (+) | 543 | WP_000949954.1 | CvpA family protein | - |
| P1I87_RS01425 (P1I87_01425) | - | 242822..245161 (+) | 2340 | WP_001060323.1 | endonuclease MutS2 | - |
| P1I87_RS01430 (P1I87_01430) | - | 245165..245665 (+) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
| P1I87_RS01435 (P1I87_01435) | trxA | 245728..246060 (+) | 333 | WP_001932060.1 | thioredoxin | - |
| P1I87_RS01440 (P1I87_01440) | - | 246106..246699 (-) | 594 | WP_000402394.1 | helix-turn-helix transcriptional regulator | - |
| P1I87_RS01445 (P1I87_01445) | mutY | 246876..248030 (-) | 1155 | WP_000566235.1 | A/G-specific adenine glycosylase | - |
| P1I87_RS01450 (P1I87_01450) | rpsF | 249094..249381 (+) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| P1I87_RS01455 (P1I87_01455) | ssbA | 249393..249884 (+) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=799722 P1I87_RS01455 WP_000609585.1 249393..249884(+) (ssbA) [Streptococcus agalactiae strain Guangzhou-SAG092]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=799722 P1I87_RS01455 WP_000609585.1 249393..249884(+) (ssbA) [Streptococcus agalactiae strain Guangzhou-SAG092]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |