Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   RDV59_RS05195 Genome accession   NZ_CP133476
Coordinates   1010569..1011225 (-) Length   218 a.a.
NCBI ID   WP_072903634.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005569..1016225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS05180 (RDV59_05180) holA 1007319..1008353 (+) 1035 WP_038675727.1 DNA polymerase III subunit delta -
  RDV59_RS05185 (RDV59_05185) sodA 1008449..1009054 (+) 606 WP_004182735.1 superoxide dismutase SodA -
  RDV59_RS05190 (RDV59_05190) - 1009152..1010537 (+) 1386 WP_072903633.1 serine hydrolase -
  RDV59_RS05195 (RDV59_05195) cclA/cilC 1010569..1011225 (-) 657 WP_072903634.1 A24 family peptidase Machinery gene
  RDV59_RS05200 (RDV59_05200) - 1011335..1011856 (+) 522 WP_014634248.1 Dps family protein -
  RDV59_RS05205 (RDV59_05205) - 1011944..1012381 (+) 438 WP_002884117.1 Fur family transcriptional regulator -
  RDV59_RS05210 (RDV59_05210) - 1012484..1012690 (+) 207 WP_014634249.1 YqgQ family protein -
  RDV59_RS05215 (RDV59_05215) - 1012683..1013651 (+) 969 WP_002884020.1 ROK family glucokinase -
  RDV59_RS05220 (RDV59_05220) typA 1013796..1015646 (+) 1851 WP_038675728.1 translational GTPase TypA -
  RDV59_RS05225 (RDV59_05225) - 1015666..1015935 (+) 270 WP_002884134.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25437.79 Da        Isoelectric Point: 8.3854

>NTDB_id=799695 RDV59_RS05195 WP_072903634.1 1010569..1011225(-) (cclA/cilC) [Streptococcus salivarius strain LMG 11489]
MLSIIYFFLGASFGSFIGLICDRFPERSIIFPRSHCSHCKHQLRFFEMIPILSQLFLRSRCRSCQTPIPFRYLFMELFCG
VISLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTVPLLFMGNYYITFALGIILAILSYMKHLNIGEGDFL
YLASASLIFPFSKILLIIEIACLLGLAYFLLRRNLKECIPFVPFLFLGILLLTFYSII

Nucleotide


Download         Length: 657 bp        

>NTDB_id=799695 RDV59_RS05195 WP_072903634.1 1010569..1011225(-) (cclA/cilC) [Streptococcus salivarius strain LMG 11489]
ATGTTAAGTATTATTTATTTTTTTCTAGGAGCCTCTTTTGGTTCATTCATCGGACTAATTTGTGATCGTTTTCCTGAGAG
GTCGATTATTTTCCCTAGAAGTCACTGTAGCCATTGCAAGCATCAGCTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGCCGTTCATGTCAGACTCCTATCCCTTTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATCCCTGCTATATTTCTATGACTTTTTAAGTCTTGAAGTGACCTACTTTCTTTACTTCAGCCTTTGTCTGTCGAT
TTTTGATTTGAAACATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACAGTCCCACTCTTATTCATGGGCAACTACT
ACATTACATTTGCCTTAGGTATAATCCTCGCTATCCTTTCTTATATGAAACATCTAAATATTGGGGAAGGAGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTACTAATTATCGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTTAAGGAATGCATTCCATTTGTCCCATTTCTTTTTCTAGGGATATTACTTCTTACTT
TTTATTCAATTATATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae TIGR4

40.654

98.165

0.399
  cclA/cilC Streptococcus mitis NCTC 12261

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae Rx1

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae D39

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae R6

39.72

98.165

0.39