Detailed information NTG0799691

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: CupriaWKF_RS02045
• Genome accession: NZ_CP119572
• Coordinates: 423780..424322 (+)
• Length: 180 a.a.
• NCBI ID: WP_276099387.1
• Uniprot ID: -
• Organism: Cupriavidus sp. WKF15
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	425166..436879	423780..424322	flank	844

Gene organization within MGE regions

Location: 423780..436879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CupriaWKF_RS02045 (CupriaWKF_02045)	ssb	423780..424322 (+)	543	WP_276099387.1	single-stranded DNA-binding protein	Machinery gene
CupriaWKF_RS02050 (CupriaWKF_02050)	-	424544..424792 (-)	249	WP_276099388.1	hypothetical protein	-
CupriaWKF_RS02055 (CupriaWKF_02055)	-	425166..425762 (+)	597	WP_276099389.1	short chain dehydrogenase	-
CupriaWKF_RS02060 (CupriaWKF_02060)	-	425826..426134 (+)	309	WP_276099390.1	acylphosphatase	-
CupriaWKF_RS02065 (CupriaWKF_02065)	-	426574..426879 (+)	306	WP_276099391.1	DUF485 domain-containing protein	-
CupriaWKF_RS02070 (CupriaWKF_02070)	-	426876..428537 (+)	1662	WP_276099392.1	cation acetate symporter	-
CupriaWKF_RS02075 (CupriaWKF_02075)	-	428732..429193 (+)	462	WP_276099393.1	cupin domain-containing protein	-
CupriaWKF_RS02080 (CupriaWKF_02080)	-	429229..430482 (+)	1254	WP_276099394.1	hypothetical protein	-
CupriaWKF_RS02085 (CupriaWKF_02085)	-	430637..430966 (+)	330	WP_276099395.1	RcnB family protein	-
CupriaWKF_RS02090 (CupriaWKF_02090)	-	431059..431307 (-)	249	WP_276099396.1	hypothetical protein	-
CupriaWKF_RS02095 (CupriaWKF_02095)	-	431662..432570 (+)	909	WP_276099397.1	glutamate/aspartate ABC transporter substrate-binding protein	-
CupriaWKF_RS02100 (CupriaWKF_02100)	-	432578..433471 (-)	894	WP_276099398.1	MurR/RpiR family transcriptional regulator	-
CupriaWKF_RS02105 (CupriaWKF_02105)	-	433769..435094 (+)	1326	WP_276099399.1	aspartate aminotransferase family protein	-
CupriaWKF_RS02110 (CupriaWKF_02110)	-	435360..435809 (+)	450	WP_276099400.1	type IV pilin protein	-
CupriaWKF_RS02115 (CupriaWKF_02115)	-	435816..436292 (+)	477	WP_276099401.1	GspH/FimT family pseudopilin	-
CupriaWKF_RS02120 (CupriaWKF_02120)	pilV	436310..436879 (+)	570	WP_276099402.1	type IV pilus modification protein PilV	-

Sequence

Protein

• Length: 180 a.a.
• Molecular weight: 18896.64 Da
• Isoelectric Point: 5.9566

>NTDB_id=799691 CupriaWKF_RS02045 WP_276099387.1 423780..424322(+) (ssb) [Cupriavidus sp. WKF15]
MASVNKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVSMFGKLAEIAAQYLRKGSAVYIEG
RIRTRKWQDQSGQDKYSTEIVAEQMQMLGGRQSAGGGGDEGGYGGGGGGGGYSRESSGGGYGGRGQGGAGQGGGGQQGGA
RRQQQAPSNGFEDMDDDIPF

Nucleotide

• Length: 543 bp

>NTDB_id=799691 CupriaWKF_RS02045 WP_276099387.1 423780..424322(+) (ssb) [Cupriavidus sp. WKF15]
ATGGCATCGGTCAATAAAGTCATTCTCGTCGGCAATCTGGGCGCGGACCCGGAAACCCGCTACATGCCCAGCGGCGACGC
CGTGACCAACCTGCGCCTGGCGACCACCGACCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCGTCTCGATGTTCGGCAAGCTTGCCGAAATTGCTGCCCAGTACCTGCGCAAAGGCTCGGCAGTCTATATCGAGGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGAGCGGCCAGGACAAGTACAGCACCGAAATCGTCGCCGAACAGATGCAGAT
GCTGGGCGGTCGTCAGAGCGCCGGCGGTGGCGGCGATGAAGGCGGTTACGGTGGCGGCGGTGGTGGCGGTGGCTACAGCC
GTGAATCGTCGGGCGGCGGCTACGGCGGCCGCGGCCAGGGCGGCGCTGGCCAGGGCGGTGGCGGCCAGCAAGGCGGCGCG
CGCCGTCAGCAGCAGGCGCCGTCGAACGGGTTCGAGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (4-108)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	52.941	100	0.55
ssb	Glaesserella parasuis strain SC1401	47.12	100	0.5
ssb	Neisseria meningitidis MC58	45	100	0.45
ssb	Neisseria gonorrhoeae MS11	44.444	100	0.444