Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   RDV59_RS03640 Genome accession   NZ_CP133476
Coordinates   712090..714075 (+) Length   661 a.a.
NCBI ID   WP_038675476.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 707090..719075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS03620 (RDV59_03620) - 707382..707798 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  RDV59_RS03625 (RDV59_03625) ftsW 708059..709339 (+) 1281 WP_038675474.1 cell division peptidoglycan polymerase FtsW -
  RDV59_RS03630 (RDV59_03630) tuf 709578..710774 (+) 1197 WP_002886182.1 elongation factor Tu -
  RDV59_RS03635 (RDV59_03635) tpiA 711028..711786 (+) 759 WP_002885895.1 triose-phosphate isomerase -
  RDV59_RS03640 (RDV59_03640) recP/tkt 712090..714075 (+) 1986 WP_038675476.1 transketolase Machinery gene
  RDV59_RS03650 (RDV59_03650) tmk 714364..714993 (+) 630 WP_021144578.1 dTMP kinase -
  RDV59_RS03655 (RDV59_03655) - 715002..715877 (+) 876 WP_021144577.1 DNA polymerase III subunit delta' -
  RDV59_RS03660 (RDV59_03660) yaaT 715874..716680 (+) 807 WP_038675478.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  RDV59_RS03665 (RDV59_03665) yabA 716667..716987 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  RDV59_RS03670 (RDV59_03670) rsmI 716990..717856 (+) 867 WP_038675481.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70872.54 Da        Isoelectric Point: 4.7697

>NTDB_id=799683 RDV59_RS03640 WP_038675476.1 712090..714075(+) (recP/tkt) [Streptococcus salivarius strain LMG 11489]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVSMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQEGIDRAKGVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKTAFANETVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=799683 RDV59_RS03640 WP_038675476.1 712090..714075(+) (recP/tkt) [Streptococcus salivarius strain LMG 11489]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCCATTCAAGCCGCGAATTC
TGGACACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCATATGTACTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGCCTCTTGCAC
CTTTCAGGCTATGATGTATCAATGGATGATTTGAAGAACTTCCGTCAATGGGGTTCTAAGACTCCAGGTCACCCTGAAGT
TAATCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAACGCAGTAGGTATGGCAATGGCTG
AAGCACATTTGGCTGCTAAATTTAACAAGCCTGGTTTTGATATTGTTGATCATTATACTTATGCCCTCCATGGAGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCATCTTAAACTTGGTAAGTTGGTTCTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACATCAATGGCTTTCACTGAGGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATCCTTGTTAAAGATGGTAATGATTTGGAAGCTATTGCTAAGGCTATCGAAGAGGCTAAGGCAGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGCCAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGAGGGTATCGACCGTGCTAAAGGTGTTTACGGATATGATGCCCCAGCCTTTACAGTACCAGACGAAGTCG
CTCGTCGTTTTGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAATTGGCTGCTGAATACAAGACTGCTTTTGCAAATGAAACTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACACACGACTCAGTGGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGACGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGACGGTATCATCATTGCGACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAGAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564