Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RDV59_RS03405 Genome accession   NZ_CP133476
Coordinates   657077..658036 (+) Length   319 a.a.
NCBI ID   WP_038675415.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 652077..663036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS03395 (RDV59_03395) - 652686..653426 (-) 741 WP_037612002.1 CPBP family intramembrane glutamic endopeptidase -
  RDV59_RS03400 (RDV59_03400) - 653838..655775 (+) 1938 WP_038675412.1 GbpC/Spa domain-containing protein -
  RDV59_RS03405 (RDV59_03405) coiA 657077..658036 (+) 960 WP_038675415.1 competence protein CoiA Machinery gene
  RDV59_RS03410 (RDV59_03410) pepF 658047..659852 (+) 1806 WP_038675416.1 oligoendopeptidase F Regulator
  RDV59_RS03415 (RDV59_03415) - 660064..661284 (+) 1221 WP_038675419.1 OFA family MFS transporter -
  RDV59_RS03420 (RDV59_03420) - 661356..662063 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38002.75 Da        Isoelectric Point: 9.6723

>NTDB_id=799678 RDV59_RS03405 WP_038675415.1 657077..658036(+) (coiA) [Streptococcus salivarius strain LMG 11489]
MLIARNQEGNLVSALETSLQRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQNCQFFSENESAQHLSLKSALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTRAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFKQYYRKRRFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=799678 RDV59_RS03405 WP_038675415.1 657077..658036(+) (coiA) [Streptococcus salivarius strain LMG 11489]
ATGTTAATTGCAAGAAATCAGGAGGGAAACCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTGTTGAGGCATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAAATT
GTCAGTTCTTCTCTGAGAATGAATCGGCCCAACATTTATCCCTTAAGTCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGAGACTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAGAGGACACGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACTTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGCCGTTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTATC
GAAAAAGGCGTTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.338

97.492

0.442
  coiA Streptococcus pneumoniae D39

45.338

97.492

0.442
  coiA Streptococcus pneumoniae R6

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Lactococcus lactis subsp. cremoris KW2

36.364

100

0.376