Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RDV59_RS00595 Genome accession   NZ_CP133476
Coordinates   105441..106442 (-) Length   333 a.a.
NCBI ID   WP_002887068.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100441..111442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS00550 (RDV59_00550) rplP 100537..100950 (-) 414 WP_000960950.1 50S ribosomal protein L16 -
  RDV59_RS00555 (RDV59_00555) rpsC 100954..101607 (-) 654 WP_002885727.1 30S ribosomal protein S3 -
  RDV59_RS00560 (RDV59_00560) rplV 101620..101964 (-) 345 WP_002887063.1 50S ribosomal protein L22 -
  RDV59_RS00565 (RDV59_00565) rpsS 101980..102258 (-) 279 WP_000533765.1 30S ribosomal protein S19 -
  RDV59_RS00570 (RDV59_00570) rplB 102352..103185 (-) 834 WP_002885867.1 50S ribosomal protein L2 -
  RDV59_RS00575 (RDV59_00575) - 103203..103499 (-) 297 WP_002885771.1 50S ribosomal protein L23 -
  RDV59_RS00580 (RDV59_00580) rplD 103499..104122 (-) 624 WP_002885795.1 50S ribosomal protein L4 -
  RDV59_RS00585 (RDV59_00585) rplC 104147..104773 (-) 627 WP_002885755.1 50S ribosomal protein L3 -
  RDV59_RS00590 (RDV59_00590) rpsJ 104888..105196 (-) 309 WP_002885653.1 30S ribosomal protein S10 -
  RDV59_RS00595 (RDV59_00595) ruvB 105441..106442 (-) 1002 WP_002887068.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RDV59_RS00600 (RDV59_00600) - 106523..108346 (-) 1824 WP_038676887.1 acyltransferase family protein -
  RDV59_RS00605 (RDV59_00605) - 108343..108753 (-) 411 WP_002885750.1 membrane protein -
  RDV59_RS00610 (RDV59_00610) - 108750..109184 (-) 435 WP_022496078.1 low molecular weight protein-tyrosine-phosphatase -
  RDV59_RS00615 (RDV59_00615) - 109460..110752 (-) 1293 WP_037601293.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37583.09 Da        Isoelectric Point: 4.5040

>NTDB_id=799647 RDV59_RS00595 WP_002887068.1 105441..106442(-) (ruvB) [Streptococcus salivarius strain LMG 11489]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=799647 RDV59_RS00595 WP_002887068.1 105441..106442(-) (ruvB) [Streptococcus salivarius strain LMG 11489]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATACATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCTATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGCGAAACAAGTCGTAGTGTCCATCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACTCGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGCTTTGGGATTAATGGTCATATGGAATATTATGAGCTACCAGATTTGAA
GGAAATTATTGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACCCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCAGTTGGTCTAGGTACCTTGTCAGTTAATATTGCAGAAGAGCGAGAAACGG
TAGAAGATATGTACGAACCCTATCTAATTCAAAAGGGATTTATTATGCGAACACGAACAGGACGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

86.747

99.7

0.865
  ruvB Streptococcus pneumoniae R6

86.446

99.7

0.862
  ruvB Streptococcus pneumoniae D39

86.446

99.7

0.862
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.204

96.997

0.565
  ruvB Synechocystis sp. PCC 6803

51.118

93.994

0.48
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48