Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUH89_RS09985 Genome accession   NZ_CP119563
Coordinates   2053555..2054088 (+) Length   177 a.a.
NCBI ID   WP_055208382.1    Uniprot ID   -
Organism   Rhodobacter capsulatus strain 37b4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2048555..2059088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUH89_RS09965 (PUH89_09965) - 2050328..2050861 (-) 534 WP_074553364.1 component of SufBCD complex -
  PUH89_RS09970 (PUH89_09970) hemB 2051001..2051999 (+) 999 WP_055208376.1 porphobilinogen synthase -
  PUH89_RS09975 (PUH89_09975) - 2052108..2052665 (+) 558 WP_055208378.1 YSC84-related protein -
  PUH89_RS09980 (PUH89_09980) - 2052742..2053362 (-) 621 WP_055208380.1 lytic transglycosylase domain-containing protein -
  PUH89_RS09985 (PUH89_09985) ssb 2053555..2054088 (+) 534 WP_055208382.1 single-stranded DNA-binding protein Machinery gene
  PUH89_RS09990 (PUH89_09990) - 2054270..2055142 (-) 873 WP_055208943.1 NAD(P)-dependent oxidoreductase -
  PUH89_RS09995 (PUH89_09995) - 2055255..2057729 (+) 2475 WP_074553316.1 penicillin acylase family protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18270.83 Da        Isoelectric Point: 5.2955

>NTDB_id=799633 PUH89_RS09985 WP_055208382.1 2053555..2054088(+) (ssb) [Rhodobacter capsulatus strain 37b4]
MAGSVNKVILVGNLGRDPEVRSFANGGKVCNLRIATSESWRDKQSGERKERTEWHSVAIFNEPLAKIAEQYLRKGSTVYI
EGQLETRKWTDQQGQERYTTEVVLRPYTGNLTLLGGRDGGGSGGGGGGNYGGGAQGGGYGGGYDDGPGYGGGGGGASAPS
SGGGGGGRSDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=799633 PUH89_RS09985 WP_055208382.1 2053555..2054088(+) (ssb) [Rhodobacter capsulatus strain 37b4]
ATGGCGGGATCGGTGAACAAGGTCATTCTAGTGGGCAACCTCGGGCGCGACCCGGAGGTGCGCAGCTTCGCCAATGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCTCGGAATCCTGGCGCGACAAGCAGTCGGGCGAGCGCAAGGAACGCACAGAAT
GGCATTCCGTCGCGATCTTCAACGAGCCGCTGGCGAAGATCGCCGAGCAATATCTGCGCAAGGGCTCGACCGTCTACATC
GAGGGCCAGCTGGAAACCCGCAAATGGACCGACCAGCAGGGCCAGGAACGCTACACGACCGAAGTGGTGCTGCGCCCCTA
TACGGGCAACCTGACGCTGCTCGGCGGCCGGGATGGCGGCGGCTCTGGCGGTGGCGGCGGTGGCAATTACGGCGGCGGCG
CGCAGGGCGGCGGTTATGGCGGCGGCTACGATGACGGCCCGGGCTATGGTGGCGGCGGTGGCGGCGCATCGGCCCCCTCG
TCGGGCGGCGGTGGCGGTGGCCGCTCGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.672

100

0.537
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.514
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.395
  ssb Neisseria meningitidis MC58

39.106

100

0.395