Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P2E06_RS02410 Genome accession   NZ_CP119552
Coordinates   567039..567557 (+) Length   172 a.a.
NCBI ID   WP_154623819.1    Uniprot ID   -
Organism   Providencia stuartii strain CAVP450     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 562039..572557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2E06_RS02400 (P2E06_02400) - 562500..563696 (+) 1197 WP_196714001.1 amino acid aminotransferase -
  P2E06_RS02405 (P2E06_02405) uvrA 563807..566641 (-) 2835 WP_154623820.1 excinuclease ABC subunit UvrA -
  P2E06_RS02410 (P2E06_02410) ssb 567039..567557 (+) 519 WP_154623819.1 single-stranded DNA-binding protein Machinery gene
  P2E06_RS02415 (P2E06_02415) aarP 568165..568572 (-) 408 WP_154623204.1 HTH-type transcriptional activator AarP -
  P2E06_RS02420 (P2E06_02420) - 568730..569896 (-) 1167 WP_272657866.1 MFS transporter -
  P2E06_RS02425 (P2E06_02425) ivbL 570268..570363 (+) 96 WP_163860634.1 ilvB operon leader peptide IvbL -
  P2E06_RS02430 (P2E06_02430) ilvB 570468..572165 (+) 1698 WP_251465023.1 acetolactate synthase large subunit -
  P2E06_RS02435 (P2E06_02435) ilvN 572168..572452 (+) 285 WP_004924476.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18410.37 Da        Isoelectric Point: 4.9567

>NTDB_id=799615 P2E06_RS02410 WP_154623819.1 567039..567557(+) (ssb) [Providencia stuartii strain CAVP450]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGESSGQSQGGQGGWGQPQQPAAQQFSGGGAPARAPSSPAPQSS
EPPIDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=799615 P2E06_RS02410 WP_154623819.1 567039..567557(+) (ssb) [Providencia stuartii strain CAVP450]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCTAATGG
CGGTGCCGTGGCAAACCTGACTCTGGCAACTTCTGAAAGCTGGCGTGATAAGCAAACCGGCGAAATGCGTGAGAAAACAG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCTGAAGTTGCGGGTGAATATCTGAAAAAAGGTTCTCAGGTATACATC
GAAGGTTCTTTGCAAACGCGTAAATGGCAAGACCAAAGTGGTCAAGATCGTTATACCACAGAAGTCGTGGTTAACATTGG
CGGGTCAATGCAAATGCTAGGCGGACGCGGCGGTGAATCTTCAGGCCAAAGCCAAGGTGGCCAAGGTGGTTGGGGGCAAC
CACAGCAACCAGCAGCGCAACAATTTAGTGGTGGTGGCGCACCAGCGCGTGCACCGTCATCGCCAGCTCCACAAAGCAGT
GAGCCACCAATTGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.111

100

0.744
  ssb Glaesserella parasuis strain SC1401

55.435

100

0.593
  ssb Neisseria meningitidis MC58

47.191

100

0.488
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.488