Detailed information NTG0799534

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: RDV58_RS01275
• Genome accession: NZ_CP133475
• Coordinates: 243432..244427 (+)
• Length: 331 a.a.
• NCBI ID: WP_002263402.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain LMG 14558
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 238432..249427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV58_RS01255 (RDV58_01255)	-	238626..240248 (+)	1623	WP_002280103.1	class I SAM-dependent DNA methyltransferase	-
RDV58_RS01260 (RDV58_01260)	-	240318..240551 (+)	234	WP_018110251.1	hypothetical protein	-
RDV58_RS01265 (RDV58_01265)	-	240555..241571 (+)	1017	WP_002280101.1	restriction endonuclease subunit S	-
RDV58_RS01270 (RDV58_01270)	-	241911..243215 (-)	1305	WP_002270793.1	hypothetical protein	-
RDV58_RS01275 (RDV58_01275)	ruvB	243432..244427 (+)	996	WP_002263402.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
RDV58_RS01280 (RDV58_01280)	-	244465..244890 (+)	426	WP_002264681.1	low molecular weight protein-tyrosine-phosphatase	-
RDV58_RS01285 (RDV58_01285)	-	244955..245338 (+)	384	WP_011074470.1	membrane protein	-
RDV58_RS01290 (RDV58_01290)	-	245335..247125 (+)	1791	WP_002263405.1	acyltransferase family protein	-
RDV58_RS01295 (RDV58_01295)	thrC	247807..249291 (+)	1485	WP_002269369.1	threonine synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37287.75 Da
• Isoelectric Point: 4.7070

>NTDB_id=799534 RDV58_RS01275 WP_002263402.1 243432..244427(+) (ruvB) [Streptococcus mutans strain LMG 14558]
MTRILDNELMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATAK
AYEHLGYRYTE

Nucleotide

• Length: 996 bp

>NTDB_id=799534 RDV58_RS01275 WP_002263402.1 243432..244427(+) (ruvB) [Streptococcus mutans strain LMG 14558]
ATGACTAGAATTTTAGATAACGAACTTATGGGTGATGAGGAATTTGCAGAACGCACACTTCGTCCGCAGTATTTACAGGA
ATATATTGGTCAGGATAAGGTTAAAGACCAGCTGAAGATCTTCATCAAAGCAGCTAAACAACGTGATGAGGCTTTGGATC
ATGTCCTTTTATTTGGTCCTCCTGGCCTTGGTAAGACCACCATGGCTTTTGTTATTGCCAATGAATTGGGGGTTAATCTT
AAGCAAACCAGCGGTCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTGTTTTAAATGATTTAGAGCCTGGGGATGTTCT
TTTTATTGATGAAATTCATCGGCTGCCTATGGCTGTTGAGGAAGTTCTTTATAGTGCCATGGAAGATTTTTATATTGACA
TTATGATTGGTGCAGGAGAAACTTCTCGCAGCGTGCATTTGGATTTGCCGCCTTTTACTTTAATTGGGGCGACAACACGG
GCAGGTATGTTGTCAAATCCTTTGCGGGCGCGTTTTGGGATTACAGGTCATATGGAATATTATACAGATATCGATTTAAC
TGAAATTGTTGAGCGAACAGCGGATATTTTTGAGATGACCATTACCCATCAAGCTGCGTTAGAATTAGCACGGCGTTCCC
GTGGGACTCCGCGTATTGCTAACCGACTCTTAAAACGTGTCCGAGATTATGCCCAAATTATGGGAGATGGTCTTATTGAT
GATAAAATAACAGATAAAGCTTTGACCATGCTTGATGTTGATCATGAAGGCCTTGATTATGTTGATCAGAAGATCCTTAA
GACGATGATTGAGATGTACCATGGCGGGCCTGTTGGTCTGGGGACTCTGTCAGTTAATATTGCCGAGGAACGTGAGACCG
TTGAAGACATGTATGAGCCCTATCTTATTCAAAAAGGATTTATCATACGGACTCGCAGTGGACGTGTAGCCACTGCCAAA
GCTTATGAACATTTGGGTTATCGTTACACAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	91.239	100	0.912
ruvB	Streptococcus pneumoniae R6	90.937	100	0.909
ruvB	Streptococcus pneumoniae D39	90.937	100	0.909
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.583	0.595
ruvB	Helicobacter pylori 26695	50.464	97.583	0.492
ruvB	Synechocystis sp. PCC 6803	50.479	94.562	0.477