Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P0Y37_RS06725 Genome accession   NZ_CP119523
Coordinates   1390464..1390898 (-) Length   144 a.a.
NCBI ID   WP_014668227.1    Uniprot ID   -
Organism   Pasteurella multocida strain LXSS001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1385464..1395898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0Y37_RS06695 - 1386028..1386297 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  P0Y37_RS06700 yacG 1386297..1386500 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  P0Y37_RS06705 coaE 1386511..1387131 (-) 621 WP_005751078.1 dephospho-CoA kinase -
  P0Y37_RS06710 - 1387146..1387868 (-) 723 WP_016534448.1 A24 family peptidase -
  P0Y37_RS06715 - 1387868..1389079 (-) 1212 WP_014668225.1 type II secretion system F family protein -
  P0Y37_RS06720 pilB 1389079..1390464 (-) 1386 WP_014668226.1 GspE/PulE family protein Machinery gene
  P0Y37_RS06725 pilA 1390464..1390898 (-) 435 WP_014668227.1 prepilin peptidase-dependent pilin Machinery gene
  P0Y37_RS06730 ampD 1391059..1391625 (+) 567 WP_014668228.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  P0Y37_RS06735 rppH 1392211..1392807 (+) 597 WP_078819767.1 RNA pyrophosphohydrolase -
  P0Y37_RS06740 - 1392810..1393604 (+) 795 WP_078819768.1 sulfite exporter TauE/SafE family protein -
  P0Y37_RS06745 lgt 1393614..1394417 (+) 804 WP_014668230.1 prolipoprotein diacylglyceryl transferase -
  P0Y37_RS06750 - 1394423..1395274 (+) 852 WP_014668231.1 thymidylate synthase -
  P0Y37_RS06755 tadA 1395301..1395789 (+) 489 WP_014668232.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15084.52 Da        Isoelectric Point: 9.1281

>NTDB_id=799488 P0Y37_RS06725 WP_014668227.1 1390464..1390898(-) (pilA) [Pasteurella multocida strain LXSS001]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR
ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTPSGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=799488 P0Y37_RS06725 WP_014668227.1 1390464..1390898(-) (pilA) [Pasteurella multocida strain LXSS001]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC
CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT
GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG
CTTGGAAGGAATTAGCTATACGCTGACACCGAGTGGTAACGCTGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC
AATCTGACATTTTCCCAGCAGGATTTTGTGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Pilin (bacterial filament) (Pilin)

(42-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

62.5

100

0.625
  pilA Haemophilus influenzae Rd KW20

60.417

100

0.604
  pilA Glaesserella parasuis strain SC1401

53.02

100

0.549
  pilA/pilA1 Eikenella corrodens VA1

38.129

96.528

0.368