Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   P2C01_RS12580 Genome accession   NZ_CP119521
Coordinates   2710952..2711821 (+) Length   289 a.a.
NCBI ID   WP_014204458.1    Uniprot ID   A0A0Q2XW48
Organism   Vibrio furnissii strain C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2705952..2716821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS12560 nadC 2706317..2707204 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  P2C01_RS12565 - 2707451..2707900 (+) 450 WP_055466517.1 pilin -
  P2C01_RS12570 pilB 2707907..2709595 (+) 1689 WP_275722945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P2C01_RS12575 pilC 2709674..2710900 (+) 1227 WP_208550263.1 type II secretion system F family protein Machinery gene
  P2C01_RS12580 pilD 2710952..2711821 (+) 870 WP_014204458.1 prepilin peptidase Machinery gene
  P2C01_RS12585 coaE 2711824..2712432 (+) 609 WP_275722948.1 dephospho-CoA kinase -
  P2C01_RS12590 zapD 2712465..2713205 (+) 741 WP_004729090.1 cell division protein ZapD -
  P2C01_RS12595 yacG 2713263..2713460 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  P2C01_RS12600 parC 2713553..2715826 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32195.27 Da        Isoelectric Point: 6.8269

>NTDB_id=799461 P2C01_RS12580 WP_014204458.1 2710952..2711821(+) (pilD) [Vibrio furnissii strain C1]
MDIFTFYPWLFPTLATLLGLIIGSFLNVVIYRLPKIMEREWRQDCAESFPEYHIEPPQGVLTLSTPRSTCPHCDTPIRII
DNIPVLSWLLLRGKCSQCHAPISARYPLIESFTALCSLAIALQFGFSWFAVALLFFSYVLIAATFIDFDTMLLPDQLTLP
LMWGGIALALAGISPITLQDAVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSVVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSALYGQAIVGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=799461 P2C01_RS12580 WP_014204458.1 2710952..2711821(+) (pilD) [Vibrio furnissii strain C1]
ATGGACATTTTTACTTTCTATCCCTGGCTGTTTCCCACGCTGGCCACCTTGCTGGGTCTAATCATCGGCAGTTTTCTCAA
TGTGGTGATCTATCGCTTGCCGAAAATCATGGAGCGCGAGTGGCGTCAAGACTGTGCCGAGTCCTTTCCGGAATACCACA
TTGAACCGCCCCAAGGTGTGTTAACGCTCAGCACGCCCCGTTCCACCTGCCCACATTGTGATACACCGATTCGTATCATC
GACAATATTCCGGTACTGAGCTGGCTGCTACTGCGCGGCAAGTGCTCGCAGTGCCACGCGCCCATTAGCGCTCGCTACCC
ATTGATCGAATCGTTTACGGCGCTGTGCAGTTTGGCGATTGCTTTGCAGTTTGGTTTTAGCTGGTTTGCGGTGGCTTTGC
TGTTTTTCAGTTATGTGCTGATTGCGGCAACCTTCATCGACTTCGACACCATGCTGCTGCCTGACCAACTGACGCTACCG
TTGATGTGGGGCGGTATCGCACTCGCGCTAGCGGGCATCAGTCCAATCACGTTGCAAGATGCCGTGATCGGCGCGATGGC
GGGGTATCTGGCGCTGTGGTCCGTCTACTGGCTGTTTAAACTGCTCACCGGCAAGGAAGGCATGGGGTACGGTGACTTTA
AATTGTTGGCCGCATTGGGCGCTTGGCTCGGATGGCAGCAGCTGCCGATCATCATTTTGATGTCTTCAGTGGTTGGCCTG
GTGTTTGGTCTGATTCAACTGCGCCTGCAAAAACGCGGCATAGATAAAGCCTTCCCGTTTGGCCCTTATCTGGCGATTGC
GGGTTGGCTGTCAGCGCTATACGGTCAGGCGATCGTTGGCTGGTATTTTCACTCCGTATTAGGATTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2XW48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

79.167

99.654

0.789
  pilD Vibrio campbellii strain DS40M4

77.431

99.654

0.772
  pilD Acinetobacter nosocomialis M2

52.574

94.118

0.495
  pilD Acinetobacter baumannii D1279779

51.812

95.502

0.495
  pilD Neisseria gonorrhoeae MS11

47.955

93.08

0.446