Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P2C01_RS12575 Genome accession   NZ_CP119521
Coordinates   2709674..2710900 (+) Length   408 a.a.
NCBI ID   WP_208550263.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704674..2715900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS12550 fldB 2705074..2705595 (+) 522 WP_004729075.1 flavodoxin FldB -
  P2C01_RS12555 ampD 2705617..2706168 (-) 552 WP_275722940.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  P2C01_RS12560 nadC 2706317..2707204 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  P2C01_RS12565 - 2707451..2707900 (+) 450 WP_055466517.1 pilin -
  P2C01_RS12570 pilB 2707907..2709595 (+) 1689 WP_275722945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P2C01_RS12575 pilC 2709674..2710900 (+) 1227 WP_208550263.1 type II secretion system F family protein Machinery gene
  P2C01_RS12580 pilD 2710952..2711821 (+) 870 WP_014204458.1 prepilin peptidase Machinery gene
  P2C01_RS12585 coaE 2711824..2712432 (+) 609 WP_275722948.1 dephospho-CoA kinase -
  P2C01_RS12590 zapD 2712465..2713205 (+) 741 WP_004729090.1 cell division protein ZapD -
  P2C01_RS12595 yacG 2713263..2713460 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  P2C01_RS12600 parC 2713553..2715826 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44811.10 Da        Isoelectric Point: 10.5674

>NTDB_id=799460 P2C01_RS12575 WP_208550263.1 2709674..2710900(+) (pilC) [Vibrio furnissii strain C1]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGLLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVIGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=799460 P2C01_RS12575 WP_208550263.1 2709674..2710900(+) (pilC) [Vibrio furnissii strain C1]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGACGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATCGAGGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAAGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGCGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGCGTGCCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCACCGCAAAGCAGAAATGAAATCGATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCAGGCACCCCGATGTCCAAAGCGATGCGCACTGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAACAATCCGGTAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTGCGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCAATGGTGATGTTGGTCGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTCCCTTGGTTTACCC
AGCAAATTCTAAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGTTTACTGGCGACCAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAACAAATCATTGGTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGATTTCCTGTTATCGGCGC
GGTATTAGCCAAGGCTGCCATTGCCAAATTCAGCCGTACATTGGCCACCAGTTTTAGCGCCGGTATACCGATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAAGAGGTACATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACTATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GTAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.804

100

0.848
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Pseudomonas stutzeri DSM 10701

41.832

99.02

0.414
  pilC Legionella pneumophila strain ERS1305867

42.105

97.794

0.412
  pilC Acinetobacter baylyi ADP1

40.196

100

0.402
  pilG Neisseria gonorrhoeae MS11

39.163

99.51

0.39
  pilG Neisseria meningitidis 44/76-A

38.916

99.51

0.387