Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P0M04_RS10155 Genome accession   NZ_CP119520
Coordinates   2284318..2284818 (+) Length   166 a.a.
NCBI ID   WP_036233516.1    Uniprot ID   -
Organism   Telluria mixta strain ACM 1762     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2279318..2289818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M04_RS10145 (P0M04_10155) - 2280097..2280984 (-) 888 WP_259452594.1 hypothetical protein -
  P0M04_RS10150 (P0M04_10160) uvrA 2280987..2283836 (-) 2850 WP_259452595.1 excinuclease ABC subunit UvrA -
  P0M04_RS10155 (P0M04_10165) ssb 2284318..2284818 (+) 501 WP_036233516.1 single-stranded DNA-binding protein Machinery gene
  P0M04_RS10160 (P0M04_10170) - 2285108..2288224 (+) 3117 WP_281042451.1 EAL domain-containing protein -
  P0M04_RS10165 (P0M04_10175) - 2288239..2288541 (+) 303 WP_259452597.1 putative quinol monooxygenase -
  P0M04_RS10170 (P0M04_10180) - 2288538..2289383 (-) 846 WP_259452598.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18069.26 Da        Isoelectric Point: 5.9416

>NTDB_id=799421 P0M04_RS10155 WP_036233516.1 2284318..2284818(+) (ssb) [Telluria mixta strain ACM 1762]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGIERYATDIIAENMQMLGGRQGMGGGDSYGGGDDMGGYDAPPSRPAPRQAPPAPAARPQPKPAPNFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=799421 P0M04_RS10155 WP_036233516.1 2284318..2284818(+) (ssb) [Telluria mixta strain ACM 1762]
ATGGCATCAGTTAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCGCTACATGCCGAGCGGCGACGC
CATCGCCAACATCGCCGTGGCCACGTCCTACAAATCGAAGGACCGCAACACCGGCGAGCAGAAAGAGCTGACCGAGTGGC
ACCGCATCTCGTTCTTCGGCCGCCTTGCCGAAATCGTCGGCCAGTACCTGAAAAAGGGTTCGTCGGTCTACGTGGAAGGC
CGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCATCGAGCGCTACGCCACCGACATCATCGCTGAAAACATGCAGAT
GCTGGGCGGCCGCCAGGGCATGGGCGGCGGCGACAGCTACGGTGGTGGCGACGACATGGGCGGCTACGACGCCCCGCCGA
GCCGCCCGGCCCCGCGCCAGGCCCCGCCGGCCCCGGCCGCACGTCCGCAGCCGAAACCGGCGCCGAACTTCTCGGACATG
GATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

53.714

100

0.566
  ssb Neisseria meningitidis MC58

53.714

100

0.566
  ssb Vibrio cholerae strain A1552

51.124

100

0.548
  ssb Glaesserella parasuis strain SC1401

47.283

100

0.524