Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWR52_RS21440 Genome accession   NZ_CP119446
Coordinates   4319875..4320411 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella boydii strain CIP 56-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4314875..4325411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWR52_RS21420 (PWR52_21420) soxR 4316603..4317067 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  PWR52_RS21425 (PWR52_21425) soxS 4317153..4317476 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  PWR52_RS21430 (PWR52_21430) pdeC 4317479..4319065 (-) 1587 WP_078167161.1 c-di-GMP phosphodiesterase PdeC -
  PWR52_RS21435 (PWR52_21435) - 4319495..4319776 (+) 282 WP_001295689.1 YjcB family protein -
  PWR52_RS21440 (PWR52_21440) ssb 4319875..4320411 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PWR52_RS21445 (PWR52_21445) uvrA 4320664..4323486 (+) 2823 WP_078167160.1 excinuclease ABC subunit UvrA -
  PWR52_RS21450 (PWR52_21450) - 4323521..4323877 (-) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  PWR52_RS21455 (PWR52_21455) - 4323881..4324297 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PWR52_RS21460 (PWR52_21460) aphA 4324408..4325121 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=799384 PWR52_RS21440 WP_000168305.1 4319875..4320411(-) (ssb) [Shigella boydii strain CIP 56-18]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=799384 PWR52_RS21440 WP_000168305.1 4319875..4320411(-) (ssb) [Shigella boydii strain CIP 56-18]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCA
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489