Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RDV50_RS09725 Genome accession   NZ_CP133462
Coordinates   2019323..2020354 (+) Length   343 a.a.
NCBI ID   WP_137040861.1    Uniprot ID   -
Organism   Neisseria subflava strain LMG 5313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2014323..2025354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV50_RS09700 (RDV50_09700) ndk 2014363..2014788 (-) 426 WP_004519785.1 nucleoside-diphosphate kinase -
  RDV50_RS09705 (RDV50_09705) zapE 2014883..2016019 (-) 1137 WP_137040865.1 cell division protein ZapE -
  RDV50_RS09710 (RDV50_09710) - 2016281..2016595 (-) 315 WP_003678992.1 integration host factor subunit beta -
  RDV50_RS09715 (RDV50_09715) rpsA 2016606..2018291 (-) 1686 WP_137040863.1 30S ribosomal protein S1 -
  RDV50_RS09720 (RDV50_09720) cmk 2018448..2019107 (-) 660 WP_137040862.1 (d)CMP kinase -
  RDV50_RS09725 (RDV50_09725) ruvB 2019323..2020354 (+) 1032 WP_137040861.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RDV50_RS09730 (RDV50_09730) - 2020476..2022383 (+) 1908 WP_137040860.1 ATP-binding cassette domain-containing protein -
  RDV50_RS09735 (RDV50_09735) - 2022474..2022905 (+) 432 WP_003683270.1 type II toxin-antitoxin system RatA family toxin -
  RDV50_RS09740 (RDV50_09740) - 2022898..2023170 (+) 273 WP_137040859.1 RnfH family protein -
  RDV50_RS09745 (RDV50_09745) pth 2023225..2023803 (+) 579 WP_003683307.1 aminoacyl-tRNA hydrolase -
  RDV50_RS09750 (RDV50_09750) - 2023907..2024116 (+) 210 WP_107867605.1 dioxygenase -
  RDV50_RS09755 (RDV50_09755) - 2024113..2024481 (+) 369 WP_003683668.1 VanZ family protein -
  RDV50_RS09760 (RDV50_09760) - 2024586..2024693 (-) 108 Protein_1887 opacity family porin -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37814.34 Da        Isoelectric Point: 5.1560

>NTDB_id=799333 RDV50_RS09725 WP_137040861.1 2019323..2020354(+) (ruvB) [Neisseria subflava strain LMG 5313]
MLQTDNLTSAQPQRIITAQNISAQEELLERALRPKTLDDYIGQDKAKEQLAIFIQAAKKRGEALDHTLLFGPPGLGKTTL
AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLEPHDVLFIDEIHRLSPVVEEILYPALEDYQLDIMIGEGPAARSVKID
LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYQNKDLATIVTRSAQLLQLDMGEEGAMEVAKRSRGTPRIANRLLRRVR
DYADVKNNGVIDAEIADAALSMLDVDGHGLDVMDRKFLEAILHKFSGGPVGLENVAAAIGESTDTIEDVIEPYLIQQGFL
QRTPRGRVATERAYLHFGLKVQE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=799333 RDV50_RS09725 WP_137040861.1 2019323..2020354(+) (ruvB) [Neisseria subflava strain LMG 5313]
ATGTTACAAACTGATAATCTTACTTCTGCACAACCTCAGCGCATTATCACTGCTCAAAATATTTCCGCTCAGGAAGAATT
GCTTGAACGCGCTTTGCGTCCGAAAACTTTAGACGACTATATCGGGCAGGATAAAGCAAAAGAGCAGTTGGCCATTTTTA
TTCAGGCAGCGAAAAAACGTGGTGAAGCGCTTGACCACACTTTGCTGTTTGGTCCTCCGGGTTTGGGCAAAACTACTTTG
GCACACATTATCGCTAAAGAGTTAGGCGTTAATTTGCGTCAAACCAGCGGCCCGGTTTTGGAACGTGCCGGCGACCTTGC
AGCCTTGTTGACTAATCTTGAGCCGCATGATGTGCTGTTTATCGATGAAATCCACCGTTTAAGTCCTGTGGTTGAAGAAA
TCCTTTATCCTGCGCTTGAAGATTATCAGTTGGACATCATGATAGGCGAAGGACCGGCCGCGCGTTCGGTCAAAATCGAT
TTGCCGCCGTTTACATTGGTAGGCGCAACGACCCGTGCCGGTATGCTGACCAATCCTTTGCGCGACCGTTTCGGTATCGT
ATCCCGATTGGAGTTTTATCAAAACAAAGACTTGGCAACTATTGTTACCCGTTCTGCTCAACTATTGCAGTTGGATATGG
GTGAAGAGGGCGCGATGGAAGTGGCCAAGCGCAGCCGCGGTACGCCGCGTATTGCCAACCGCCTTTTGCGACGTGTGCGC
GATTACGCTGATGTGAAAAACAACGGTGTCATTGATGCGGAAATTGCCGATGCGGCTTTGAGTATGCTGGATGTGGACGG
TCATGGTTTGGATGTGATGGACAGGAAATTCCTTGAGGCGATTCTGCACAAGTTCAGCGGCGGCCCTGTCGGTTTGGAAA
ACGTGGCTGCTGCGATTGGTGAATCAACCGATACCATCGAAGATGTGATTGAACCATATCTGATTCAGCAGGGCTTTTTG
CAGCGTACACCGCGCGGACGTGTAGCAACAGAACGAGCCTATCTGCATTTCGGCTTGAAGGTTCAAGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(32-190)

RuvB AAA lid domain (AAA_lid_4)

(193-266)

RuvB C-terminal winged helix domain (WHD_RuvB)

(268-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae R6

61.585

95.627

0.589
  ruvB Streptococcus pneumoniae D39

61.585

95.627

0.589
  ruvB Streptococcus pneumoniae TIGR4

61.28

95.627

0.586
  ruvB Bacillus subtilis subsp. subtilis str. 168

59.756

95.627

0.571
  ruvB Synechocystis sp. PCC 6803

53.963

95.627

0.516
  ruvB Helicobacter pylori 26695

57.516

89.213

0.513